Evidence map›Paper›PMID 24509483›Full record

ArticleOncotarget2014

RB1 gene inactivation by chromothripsis in human retinoblastoma.

Justina McEvoy, Panduka Nagahawatte, David Finkelstein, Jennifer Richards-Yutz, Marcus Valentine, Jing Ma, Charles Mullighan, Guangchun Song, Xiang Chen, Matthew Wilson and 17 more

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed, 1 pooled it
9.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 1 synthesis or guideline pooled it, 117 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Chromothripsis.Methods in molecular biology (Clifton, N.J.) · 2025
    Review
  9. Article
  10. Review
  11. Review
  12. Article
  13. The Use of rAAV2-RB1-Mediated Gene Therapy in Retinoblastoma.Investigative ophthalmology & visual science · 2023
    Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. The OncogeneCancers · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 4 institutions in 1 country.

Justina McEvoyDepartments of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Panduka Nagahawatte
David Finkelstein
Jennifer Richards-Yutz
Marcus Valentine
Jing Ma
Charles Mullighan
Guangchun Song
Xiang Chen
Matthew Wilson
Rachel Brennan
Stanley Pounds
Jared Becksfort
Robert Huether
Charles Lu
Robert S Fulton
Lucinda L Fulton
Xin Hong
David J Dooling
Kerri Ochoa
Elaine R Mardis
Richard K Wilson
John Easton
Jinghui Zhang
James R Downing
Arupa Ganguly
Michael A Dyer
St. Jude Children's Research Hospital · USWashington University in St. Louis · USUniversity of Pennsylvania · USUniversity of Tennessee Health Science Center · US

Funding

UNIVERSITY OF PENNSYLVANIA CAN CTR SUPPORT GRANTP30CA016520 · NCI · UNIVERSITY OF PENNSYLVANIA · PI SHELLEY L BERGER · 1985 to 2026
$222.3M
Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 1985 to 2026
$166.9M
Proliferation Control in the Retina: The Rb FamilyR01EY014867 · NEI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI DYER, MICHAEL A · 2003 to 2012
$4.5M
Proliferation and Differentiation of Retinal Stem CellsR01EY018599 · NEI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI DYER, MICHAEL A · 2008 to 2011
$2.5M
Epigenetic Reprogramming of Retinal NeuronsR01EY023619 · NEI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI DYER, MICHAEL A · 2013 to 2017
$2.2M
Molecular Targeted Therapy for RetinoblastomaR01CA168875 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI DYER, MICHAEL A · 2012 to 2016
$1.8M
Howard Hughes Medical InstituteNCI NIH HHS CA168875NCI NIH HHS CA21765NCI NIH HHS P30 CA016520NCI NIH HHS P30 CA021765NCI NIH HHS R01 CA168875NEI NIH HHS EY014867NEI NIH HHS EY018599NEI NIH HHS R01 EY014867NEI NIH HHS R01 EY018599NEI NIH HHS R01 EY023619
6 · The paper itself

Abstract

Retinoblastoma is a rare childhood cancer of the developing retina. Most retinoblastomas initiate with biallelic inactivation of the RB1 gene through diverse mechanisms including point mutations, nucleotide insertions, deletions, loss of heterozygosity and promoter hypermethylation. Recently, a novel mechanism of retinoblastoma initiation was proposed. Gallie and colleagues discovered that a small proportion of retinoblastomas lack RB1 mutations and had MYCN amplification [1]. In this study, we identified recurrent chromosomal, regional and focal genomic lesions in 94 primary retinoblastomas with their matched normal DNA using SNP 6.0 chips. We also analyzed the RB1 gene mutations and compared the mechanism of RB1 inactivation to the recurrent copy number variations in the retinoblastoma genome. In addition to the previously described focal amplification of MYCN and deletions in RB1 and BCOR, we also identified recurrent focal amplification of OTX2, a transcription factor required for retinal photoreceptor development. We identified 10 retinoblastomas in our cohort that lacked RB1 point mutations or indels. We performed whole genome sequencing on those 10 tumors and their corresponding germline DNA. In one of the tumors, the RB1 gene was unaltered, the MYCN gene was amplified and RB1 protein was expressed in the nuclei of the tumor cells. In addition, several tumors had complex patterns of structural variations and we identified 3 tumors with chromothripsis at the RB1 locus. This is the first report of chromothripsis as a mechanism for RB1 gene inactivation in cancer.

Indexed as

Chromosome AberrationsGenes, RetinoblastomaGene ExpressionGene Expression Regulation, NeoplasticGene SilencingHumansOncogene ProteinsRetinal NeoplasmsRetinoblastomaRetinoblastoma ProteinOncogene ProteinsRetinoblastoma Protein

Identifiers

PMID24509483
PMCPMC3964219
OpenAlexW1802167741

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.