Evidence map›Paper›PMID 24508980›Full record

ReviewDevelopmental and comparative immunology2014

No more non-model species: the promise of next generation sequencing for comparative immunology.

Nolwenn M Dheilly, Coen Adema, David A Raftos, Benjamin Gourbal, Christoph Grunau, Louis Du Pasquier

Abstract readReview
In one paragraph

Review in Developmental and comparative immunology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Review
  2. Review
  3. Unveiling Immunomodulatory Effects ofJournal of microbiology and biotechnology · 2024
    Article
  4. Article
  5. Immune diversity in lophotrochozoans, with a focus on recognition and effector systems.Computational and structural biotechnology journal · 2023
    Review
  6. Article
  7. Computational Methods for the Discovery and Annotation of Viral Integrations.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  8. Article
  9. Article
  10. Examining adaptive evolution of immune activity: opportunities provided by gastropods in the age of 'omics'.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2021
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Comparative immunogenomics of molluscs.Developmental and comparative immunology · 2017
    Review
  16. Article
  17. Article
  18. Article
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Nolwenn M DheillyCNRS, UMR 5244, Ecologie et Evolution des Interactions (2EI), Perpignan F-66860, France; Université de Perpignan Via Domitia, Perpignan F-66860, France. Electronic address: ndheilly@hotmail.fr.
Coen AdemaCenter for Evolutionary and Theoretical Immunology, Biology Department, University of New Mexico, Albuquerque, NM 87131, USA.
David A RaftosDepartment of Biological Sciences, Macquarie University, North Ryde, NSW 2109, Australia.
Benjamin GourbalCNRS, UMR 5244, Ecologie et Evolution des Interactions (2EI), Perpignan F-66860, France; Université de Perpignan Via Domitia, Perpignan F-66860, France.
Christoph GrunauCNRS, UMR 5244, Ecologie et Evolution des Interactions (2EI), Perpignan F-66860, France; Université de Perpignan Via Domitia, Perpignan F-66860, France.
Louis Du PasquierUniversity of Basel, Institute of Zoology and Evolutionary Biology, Basel, Switzerland.

Funding

Pilot Project ProgramP30GM110907 · NIGMS · UNIVERSITY OF NEW MEXICO · PI MILLER, ROBERT D · 2014 to 2018
$5.4M
COBRE Center for Evolutionary and Theoretical ImmunologyP20GM103452 · NIGMS · UNIVERSITY OF NEW MEXICO · PI LOKER, ERIC SAMUEL · 2012 to 2013
$4.2M
NIGMS NIH HHS P20 GM103452NIGMS NIH HHS P20GM103452NIGMS NIH HHS P30 GM110907
6 · The paper itself

Abstract

Next generation sequencing (NGS) allows for the rapid, comprehensive and cost effective analysis of entire genomes and transcriptomes. NGS provides approaches for immune response gene discovery, profiling gene expression over the course of parasitosis, studying mechanisms of diversification of immune receptors and investigating the role of epigenetic mechanisms in regulating immune gene expression and/or diversification. NGS will allow meaningful comparisons to be made between organisms from different taxa in an effort to understand the selection of diverse strategies for host defence under different environmental pathogen pressures. At the same time, it will reveal the shared and unique components of the immunological toolkit and basic functional aspects that are essential for immune defence throughout the living world. In this review, we argue that NGS will revolutionize our understanding of immune responses throughout the animal kingdom because the depth of information it provides will circumvent the need to concentrate on a few "model" species.

Indexed as

Gene Expression ProfilingHigh-Throughput Nucleotide SequencingAllergy and ImmunologyAnimalsEpigenesis, GeneticGenome-Wide Association StudyHost-Pathogen InteractionsHumansModels, AnimalSequence Analysis, DNATranscriptomeAssociation studiesDiversificationEpigeneticGene expressionImmune systemTranscriptome sequencing

Identifiers

PMID24508980
PMCPMC4096995

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.