Evidence map›Paper›PMID 24508391›Full record

ArticleMolecular cell2014

Kinase-mediated changes in nucleosome conformation trigger chromatin decondensation via poly(ADP-ribosyl)ation.

Colin J Thomas, Elena Kotova, Mark Andrake, Jared Adolf-Bryfogle, Robert Glaser, Catherine Regnard, Alexei V Tulin

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 45 citations in OpenAlex.

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  18. Role of Poly [ADP-ribose] Polymerase 1 in Activating theInternational journal of molecular sciences · 2020
    Article
  19. Hit and run versus long-term activation of PARP-1 by its different domains fine-tunes nuclear processes.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Colin J ThomasFox Chase Cancer Center, 333 Cottman Avenue, Philadelphia, PA 19111, USA.
Elena KotovaFox Chase Cancer Center, 333 Cottman Avenue, Philadelphia, PA 19111, USA.
Mark AndrakeFox Chase Cancer Center, 333 Cottman Avenue, Philadelphia, PA 19111, USA.
Jared Adolf-BryfogleFox Chase Cancer Center, 333 Cottman Avenue, Philadelphia, PA 19111, USA.
Robert GlaserWadsworth Center, New York State Department of Health, Albany, NY 12201, USA.
Catherine RegnardAdolf Butenandt Institute, Ludwig Maximilian University, Schillerstrasse 44, 80336 Munich, Germany.
Alexei V TulinFox Chase Cancer Center, 333 Cottman Avenue, Philadelphia, PA 19111, USA. Electronic address: alexei.tulin@fccc.edu.
Fox Chase Cancer Center · USLudwig-Maximilians-Universität München · DEWadsworth Center · US

Funding

Novel Epigenetic Marks in MitosisR01DK082623 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI TULIN, ALEXEI V, ZARET, KENNETH · 2008 to 2010
$2.2M
Poly ADP-ribose Polymerase in Chromatin and Transcriptional RegulationR01GM077452 · NIGMS · RESEARCH INST OF FOX CHASE CAN CTR · PI TULIN, ALEXEI V · 2008 to 2012
$1.6M
NIDDK NIH HHS R01 DK082623NIGMS NIH HHS R01 GM077452
6 · The paper itself

Abstract

Dynamically controlled posttranslational modifications of nucleosomal histones alter chromatin condensation to regulate transcriptional activation. We report that a nuclear tandem kinase, JIL-1, controls gene expression by activating poly(ADP-ribose) polymerase-1 (PARP-1). JIL-1 phosphorylates the C terminus of the H2Av histone variant, which stimulates PARP-1 enzymatic activity in the surrounding chromatin, leading to further modification of histones and chromatin loosening. The H2Av nucleosome has a higher surface representation of PARP-1 binding patch, consisting of H3 and H4 epitopes. Phosphorylation of H2Av by JIL-1 restructures this surface patch, leading to activation of PARP-1. Exposure of Val61 and Leu23 of the H4 histone is critical for PARP-1 binding on nucleosome and PARP-1 activation following H2Av phosphorylation. We propose that chromatin loosening and associated initiation of gene expression is activated by phosphorylation of H2Av in a nucleosome positioned in promoter regions of PARP-1-dependent genes.

Indexed as

AnimalsChromatinDNADrosophilaDrosophila ProteinsEpitopesHistonesImmunohistochemistryMicrococcal NucleaseModels, MolecularMolecular ConformationNucleosomesOpen Reading FramesPhosphorylationPoly Adenosine Diphosphate RibosePoly (ADP-Ribose) Polymerase-1ChromatinDNADrosophila ProteinsEpitopesHistonesJIL-1 protein, DrosophilaMicrococcal NucleaseNucleosomesParp protein, DrosophilaPoly Adenosine Diphosphate RibosePoly (ADP-Ribose) Polymerase-1Poly(ADP-ribose) PolymerasesProtein Serine-Threonine Kinases

Identifiers

PMID24508391
PMCPMC3951681
OpenAlexW2151536824

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.