Evidence map›Paper›PMID 24508307›Full record

ArticleBioorganic & medicinal chemistry2014

Discovery and optimization of a new class of pyruvate kinase inhibitors as potential therapeutics for the treatment of methicillin-resistant Staphylococcus aureus infections.

Nag S Kumar, Edie M Dullaghan, B Brett Finlay, Huansheng Gong, Neil E Reiner, J Jon Paul Selvam, Lisa M Thorson, Sara Campbell, Nicholas Vitko, Anthony R Richardson and 2 more

Open access · greenAbstract read
In one paragraph

Article in Bioorganic & medicinal chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
4.0field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it, 42 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Nag S KumarDepartment of Chemistry, Simon Fraser University, Burnaby, BC, Canada.
Edie M DullaghanCentre for Drug Research and Development (CDRD), Vancouver, BC, Canada.
B Brett FinlayDepartment of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, BC, Canada; Department of Medicine, Division of Infectious Diseases, University of British Columbia, Vancouver, BC, Canada.
Huansheng GongDepartment of Medicine, Division of Infectious Diseases, University of British Columbia, Vancouver, BC, Canada.
Neil E ReinerDepartment of Medicine, Division of Infectious Diseases, University of British Columbia, Vancouver, BC, Canada; Department of Microbiology and Immunology, Michael Smith Laboratories, University of British Columbia, Vancouver, BC, Canada.
J Jon Paul SelvamDepartment of Chemistry, Simon Fraser University, Burnaby, BC, Canada.
Lisa M ThorsonDepartment of Medicine, Division of Infectious Diseases, University of British Columbia, Vancouver, BC, Canada.
Sara CampbellCentre for Drug Research and Development (CDRD), Vancouver, BC, Canada.
Nicholas VitkoDepartment of Microbiology and Immunology, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Anthony R RichardsonDepartment of Microbiology and Immunology, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Roya ZoraghiDepartment of Medicine, Division of Infectious Diseases, University of British Columbia, Vancouver, BC, Canada.
Robert N YoungDepartment of Chemistry, Simon Fraser University, Burnaby, BC, Canada. Electronic address: robert_young@sfu.ca.
University of British Columbia · CASimon Fraser University · CACentre for Drug Research and Development · CAUniversity of North Carolina at Chapel Hill · US

Funding

The Role of Lactate in the Metabolic Evolution of Staphylococcus aureusR01AI093613 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI RICHARDSON, ANTHONY R. · 2011 to 2021
$3.6M
NIAID NIH HHS R01 AI093613
6 · The paper itself

Abstract

A novel series of bis-indoles derived from naturally occurring marine alkaloid 4 were synthesized and evaluated as inhibitors of methicillin-resistant Staphylococcus aureus (MRSA) pyruvate kinase (PK). PK is not only critical for bacterial survival which would make it a target for development of novel antibiotics, but it is reported to be one of the most highly connected 'hub proteins' in MRSA, and thus should be very sensitive to mutations and making it difficult for the bacteria to develop resistance. From the co-crystal structure of cis-3-4-dihydrohamacanthin B (4) bound to S. aureus PK we were able to identify the pharmacophore needed for activity. Consequently, we prepared simple direct linked bis-indoles such as 10b that have similar anti-MRSA activity as compound 4. Structure-activity relationship (SAR) studies were carried out on 10b and led us to discover more potent compounds such as 10c, 10d, 10k and 10 m with enzyme inhibiting activities in the low nanomolar range that effectively inhibited the bacteria growth in culture with minimum inhibitory concentrations (MIC) for MRSA as low as 0.5 μg/ml. Some potent PK inhibitors, such as 10b, exhibited attenuated antibacterial activity and were found to be substrates for an efflux mechanism in S. aureus. Studies comparing a wild type S. aureus with a construct (S. aureus LAC Δpyk::Erm(R)) that lacks PK activity confirmed that bactericidal activity of 10d was PK-dependant.

Indexed as

HumansMethicillin-Resistant Staphylococcus aureusMolecular StructurePyruvate KinaseStaphylococcal InfectionsStructure-Activity RelationshipPyruvate KinaseAntibacterialBis-indoleMRSAPyruvate kinase

Identifiers

PMID24508307
PMCPMC6108325
OpenAlexW2000052188

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.