Evidence map›Paper›PMID 24507599›Full record

ArticleBiophysical journal2014

Ion-induced defect permeation of lipid membranes.

Igor Vorobyov, Timothy E Olson, Jung H Kim, Roger E Koeppe, Olaf S Andersen, Toby W Allen

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
4.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 111 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Igor VorobyovDepartment of Chemistry, University of California, Davis, Davis, California.
Timothy E OlsonDepartment of Physiology and Biophysics, Weill Cornell Medical College, New York, New York.
Jung H KimDepartment of Physiology and Biophysics, Weill Cornell Medical College, New York, New York.
Roger E KoeppeDepartment of Chemistry and Biochemistry, University of Arkansas, Fayetteville, Arkansas.
Olaf S AndersenDepartment of Physiology and Biophysics, Weill Cornell Medical College, New York, New York. Electronic address: sparre@med.cornell.edu.
Toby W AllenSchool of Applied Sciences and Health Innovations Research Institute, RMIT University, Melbourne, Victoria, Australia; Department of Chemistry, University of California, Davis, Davis, California. Electronic address: toby.allen@rmit.edu.au.
Cornell University · USUniversity of California, Davis · USUniversity of Arkansas at Fayetteville · US

Funding

Energetics of Channel-Bilayer InteractionsR01GM021342 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI ANDERSEN, OLAF S. · 1985 to 2021
$9.9M
Putting Molecular Dynamics to the Test: Ion PermeationR01GM070971 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI ANDERSEN, OLAF S. · 2005 to 2008
$1.6M
NIGMS NIH HHS GM021342NIGMS NIH HHS GM070971NIGMS NIH HHS R01 GM021342NIGMS NIH HHS R01 GM070971
6 · The paper itself

Abstract

We have explored the mechanisms of uncatalyzed membrane ion permeation using atomistic simulations and electrophysiological recordings. The solubility-diffusion mechanism of membrane charge transport has prevailed since the 1960s, despite inconsistencies in experimental observations and its lack of consideration for the flexible response of lipid bilayers. We show that direct lipid bilayer translocation of alkali metal cations, Cl(-), and a charged arginine side chain analog occurs via an ion-induced defect mechanism. Contrary to some previous suggestions, the arginine analog experiences a large free-energy barrier, very similar to those for Na(+), K(+), and Cl(-). Our simulations reveal that membrane perturbations, due to the movement of an ion, are central for explaining the permeation process, leading to both free-energy and diffusion-coefficient profiles that show little dependence on ion chemistry and charge, despite wide-ranging hydration energies and the membrane's dipole potential. The results yield membrane permeabilities that are in semiquantitative agreement with experiments in terms of both magnitude and selectivity. We conclude that ion-induced defect-mediated permeation may compete with transient pores as the dominant mechanism of uncatalyzed ion permeation, providing new understanding for the actions of a range of membrane-active peptides and proteins.

Indexed as

Molecular Dynamics SimulationChloridesIon TransportLipid BilayersPermeabilityPotassiumSodiumChloridesLipid BilayersPotassiumSodium

Identifiers

PMID24507599
PMCPMC3945052
OpenAlexW2090334131

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.