Evidence map›Paper›PMID 24505483›Full record

ArticlePloS one2014

Transcriptional responses of Treponema denticola to other oral bacterial species.

Juni Sarkar, Ian H McHardy, Emil J Simanian, Wenyuan Shi, Renate Lux

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.6field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 22 citations in OpenAlex.

  1. Trial
  2. Review
  3. Evaluation of antibacterial properties ofSaudi pharmaceutical journal : SPJ : the official publication of the Saudi Pharmaceutical Society · 2020
    Article
  4. Review
  5. Article
  6. Oral microbiome and peri-implant diseases: where are we now?Therapeutics and clinical risk management · 2017
    Review
  7. Article
  8. Article
  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Juni SarkarSchool of Dentistry, University of California, Los Angeles, Los Angeles, California, United States of America.
Ian H McHardyDepartment of Pathology and Laboratory Medicine, University of California, Los Angeles, Los Angeles, California, United States of America.
Emil J SimanianSchool of Dentistry, University of California, Los Angeles, Los Angeles, California, United States of America.
Wenyuan ShiSchool of Dentistry, University of California, Los Angeles, Los Angeles, California, United States of America ; Department of Microbiology, Immunology, and Molecular Genetics, University of California, Los Angeles, Los Angeles, California, United States of America.
Renate LuxSchool of Dentistry, University of California, Los Angeles, Los Angeles, California, United States of America.
University of California, Los Angeles · US

Funding

Molecular analysis of F. nucleatum interspecies interactions in biofilmsR01DE021108 · NIDCR · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI LUX, RENATE, SHI, WENYUAN · 2011 to 2015
$2.0M
NIDCR NIH HHS DE021108NIDCR NIH HHS R01 DE021108
6 · The paper itself

Abstract

The classic organization by Socransky and coworkers categorized the oral bacteria of the subgingival plaque into different complexes. Treponema denticola, Porphyromonas gingivalis and Tannerella forsythia are grouped into the red complex that is highly correlated with periodontal disease. Socransky's work closely associates red with orange complex species such as Fusobacterium nucleatum and Prevotella intermedia but not with members of the other complexes. While the relationship between species contained by these complexes is in part supported by their ability to physically attach to each other, the physiological consequences of these interactions and associations are less clear. In this study, we employed T. denticola as a model organism to analyze contact-dependent responses to interactions with species belonging to the same complex (P. gingivalis and T. forsythia), the closely associated orange complex (using F. nucleatum and P. intermedia as representatives) and the unconnected yellow complex (using Streptococcus sanguinis and S. gordonii as representatives). RNA was extracted from T. denticola alone as well as after pairwise co-incubation for 5 hrs with representatives of the different complexes, and the respective gene expression profiles were determined using microarrays. Numerous genes related to motility, metabolism, transport, outer membrane and hypothetical proteins were differentially regulated in T. denticola in the presence of the tested partner species. Further analysis revealed a significant overlap in the affected genes and we identified a general response to the presence of other species, those specific to two of the three complexes as well as individual complexes. Most interestingly, many predicted major antigens (e.g. flagella, Msp, CTLP) were suppressed in responses that included red complex species indicating that the presence of the most closely associated species induces immune-evasive strategies. In summary, the data presented here provide an in-depth understanding of the transcriptional responses triggered by contact-dependent interactions between microorganisms inhabiting the periodontal pocket.

Indexed as

Gene Expression Regulation, BacterialFusobacterium nucleatumHumansPeriodontal DiseasesPorphyromonas gingivalisPrevotella intermediaStreptococcusTreponema denticola

Identifiers

PMID24505483
PMCPMC3914990
OpenAlexW1984834994

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.