Evidence map›Paper›PMID 24505386›Full record

ArticlePloS one2014

Phylogenetic analysis of Staphylococcus aureus CC398 reveals a sub-lineage epidemiologically associated with infections in horses.

Mohamed M H Abdelbary, Anne Wittenberg, Christiane Cuny, Franziska Layer, Kevin Kurt, Lothar H Wieler, Birgit Walther, Robert Skov, Jesper Larsen, Henrik Hasman and 10 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Microbiology spectrum · 2019
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Molecular Epidemiology of Methicillin-ResistantFrontiers in microbiology · 2017
    Article
  14. Article
  15. Methicillin-resistantOne health (Amsterdam, Netherlands) · 2016
    Article
  16. Livestock-Associated Methicillin ResistantFrontiers in microbiology · 2016
    Article
  17. Livestock-Associated MRSA: The Impact on Humans.Antibiotics (Basel, Switzerland) · 2015
    Review
  18. Methicillin-resistantVeterinary medicine (Auckland, N.Z.) · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 11 institutions in 8 countries.

Mohamed M H AbdelbaryRobert Koch Institute, Wernigerode, Germany.
Anne WittenbergInstitute of Microbiology and Epizootics, Free University Berlin, Berlin, Germany.
Christiane CunyRobert Koch Institute, Wernigerode, Germany.
Franziska LayerRobert Koch Institute, Wernigerode, Germany.
Kevin KurtRobert Koch Institute, Wernigerode, Germany.
Lothar H WielerInstitute of Microbiology and Epizootics, Free University Berlin, Berlin, Germany.
Birgit WaltherInstitute of Microbiology and Epizootics, Free University Berlin, Berlin, Germany.
Robert SkovMicrobiology and Infection Control, Statens Serum Institut, Copenhagen, Denmark.
Jesper LarsenMicrobiology and Infection Control, Statens Serum Institut, Copenhagen, Denmark.
Henrik HasmanNational Food Institute, Technical University of Denmark, Lyngby, Denmark.
J Ross FitzgeraldThe Roslin Institute, University of Edinburgh, Edinburgh, United Kingdom.
Tara C SmithDepartment of Epidemiology, College of Public Health, the University of Iowa, Iowa City, Iowa, United States of America.
J A WagenaarDepartment of Infectious Diseases and Immunology, Faculty of Veterinary Medicine, Utrecht University, Utrecht, the Netherlands.
Annalisa PantostiIstituto Superiore di Sanità, Rome, Italy.
Marie HallinCentre National de Référence Staphylococcus aureus, Microbiology Department, Erasme University Hospital, Université Libre de Bruxelles, Brussels, Belgium.
Marc J StruelensEuropean Centre for Disease Prevention and Control, Stockholm, Sweden.
Giles EdwardsDepartment of Microbiology, Scottish MRSA Reference Laboratory (SMRSARL), Glasgow Royal Infirmary, Glasgow, United Kingdom.
R BöseLabor Dr. Böse GmbH, Harsum, Germany.
Ulrich NübelRobert Koch Institute, Wernigerode, Germany.
Wolfgang WitteRobert Koch Institute, Wernigerode, Germany.
Robert Koch Institute · DEFreie Universität Berlin · DEStatens Serum Institut · DKEuropean Centre for Disease Prevention and Control · SEGlasgow Royal Infirmary · GBIstituto Superiore di Sanità · ITTechnical University of Denmark · DKUniversité Libre de Bruxelles · BEUniversity of Edinburgh · GBUniversity of Iowa · USUtrecht University · NL

Funding

Biotechnology and Biological Sciences Research Council BB/I013873/1
6 · The paper itself

Abstract

In the early 2000s, a particular MRSA clonal complex (CC398) was found mainly in pigs and pig farmers in Europe. Since then, CC398 has been detected among a wide variety of animal species worldwide. We investigated the population structure of CC398 through mutation discovery at 97 genetic housekeeping loci, which are distributed along the CC398 chromosome within 195 CC398 isolates, collected from various countries and host species, including humans. Most of the isolates in this collection were received from collaborating microbiologists, who had preserved them over years. We discovered 96 bi-allelic polymorphisms, and phylogenetic analyses revealed that an epidemic sub-clone within CC398 (dubbed 'clade (C)') has spread within and between equine hospitals, where it causes nosocomial infections in horses and colonises the personnel. While clade (C) was strongly associated with S. aureus from horses in veterinary-care settings (p = 2 × 10(-7)), it remained extremely rare among S. aureus isolates from human infections.

Indexed as

AnimalsGenetic LociHorse DiseasesHorsesHospitals, AnimalHumansPhylogenyPolymorphism, GeneticStaphylococcal InfectionsStaphylococcus aureus

Identifiers

PMID24505386
PMCPMC3913741
OpenAlexW2059555686

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.