Evidence map›Paper›PMID 24505360›Full record

ArticlePloS one2014

DNA methylation and regulation of the CD8A after duck hepatitis virus type 1 infection.

Qi Xu, Yang Chen, Wen Ming Zhao, Zheng Yang Huang, Yang Zhang, Xiu Li, Yi Yu Tong, Guo Bin Chang, Guo Bing Chang, Xiu Jun Duan and 1 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Frontiers in immunology · 2024
    Article
  3. DNA methylation in poultry: a review.Journal of animal science and biotechnology · 2023
    Review
  4. Article
  5. Review
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  7. Article
  8. Article
  9. Pan-Cancer Molecular Characterization of mFrontiers in oncology · 2020
    Article
  10. Food & nutrition research · 2019
    Article
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

  • Erratum issued
    Chang, Guo Bing [corrected to Chang, Guo Bin]
  • Erratum issued
5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Qi XuKey Laboratory of Animal Genetics & Breeding and Molecular Design of Jiangsu Province, Yangzhou University, Yangzhou, People's Republic of China.
Yang ChenKey Laboratory of Animal Genetics & Breeding and Molecular Design of Jiangsu Province, Yangzhou University, Yangzhou, People's Republic of China.
Wen Ming ZhaoKey Laboratory of Animal Genetics & Breeding and Molecular Design of Jiangsu Province, Yangzhou University, Yangzhou, People's Republic of China.
Zheng Yang HuangKey Laboratory of Animal Genetics & Breeding and Molecular Design of Jiangsu Province, Yangzhou University, Yangzhou, People's Republic of China.
Yang ZhangKey Laboratory of Animal Genetics & Breeding and Molecular Design of Jiangsu Province, Yangzhou University, Yangzhou, People's Republic of China.
Xiu LiKey Laboratory of Animal Genetics & Breeding and Molecular Design of Jiangsu Province, Yangzhou University, Yangzhou, People's Republic of China.
Yi Yu TongKey Laboratory of Animal Genetics & Breeding and Molecular Design of Jiangsu Province, Yangzhou University, Yangzhou, People's Republic of China.
Guo Bin Chang
Guo Bing ChangKey Laboratory of Animal Genetics & Breeding and Molecular Design of Jiangsu Province, Yangzhou University, Yangzhou, People's Republic of China.
Xiu Jun DuanNational Waterfowl Germplasm Resource Pool, Taizhou, People's Republic of China.
Guo Hong ChenKey Laboratory of Animal Genetics & Breeding and Molecular Design of Jiangsu Province, Yangzhou University, Yangzhou, People's Republic of China.
Yangzhou University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCluster of differentiation 8 (CD8) is expressed in cytotoxic T cells, where it functions as a co-receptor for the T-cell receptor by binding to major histocompatibility complex class I (MHCI) proteins, which present peptides on the cell surface. CD8A is critical for cell-mediated immune defense and T-cell development. CD8A transcription is controlled by several cis-acting elements and trans-acting elements and is also regulated by DNA methylation. However, the epigenetic regulation of CD8A in the duck and its relationship with virus infection are still unclear.

resultsWe investigated the epigenetic transcriptional regulatory mechanisms, such as DNA methylation, for the expression of the CD8A and further evaluated the contribution of such epigenetic regulatory mechanisms to DHV-I infection in the duck. Real-time quantitative polymerase chain reaction (RT-qPCR) revealed the highest level of CD8A expression to be in the thymus, followed by the lungs, spleen, and liver, and the levels of CD8A expression were very low in the kidney, cerebrum, cerebellum, and muscle in the duck. RT-qPCR also demonstrated that the CD8A mRNA was down-regulated significantly in morbid ducklings treated with DHV-1 and up-regulated significantly in non-morbid ducklings in all the tissues tested. In addition, hypermethylation of CD8A was detected in the morbid ducklings, whereas relatively low methylation of CD8A was evident in the non-morbid ducklings. The CD8A mRNA level was negatively associated with the CpG methylation level of CD8A and global methylation status.

conclusionsWe concluded that the mRNA level of the CD8A was negatively associated with the CpG methylation level of CD8A and global methylation status in the duck, suggesting that the hypermethylation of CD8A may be associated with DHV-1 infection. The first two CpG sites of the CD8A promoter region could be considered as epigenetic biomarkers for resistance breeding against duckling hepatitis disease in the duck.

Indexed as

AnimalsCD8 AntigensCpG IslandsDNA MethylationDown-RegulationDucksEpigenesis, GeneticHepatitis, Viral, AnimalHepatitis Virus, DuckPicornaviridae InfectionsPromoter Regions, GeneticRNA, MessengerTranscription, GeneticUp-RegulationCD8 antigen, alpha chainCD8 AntigensRNA, Messenger

Identifiers

PMID24505360
PMCPMC3913717
OpenAlexW2083607265

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.