Evidence map›Paper›PMID 24503810›Full record

ArticlePloS one2014

Direct and indirect targets of the E2A-PBX1 leukemia-specific fusion protein.

Christofer Diakos, Yuanyuan Xiao, Shichun Zheng, Leo Kager, Michael Dworzak, Joseph L Wiemels

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 41 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Comprehensive summary: the role of PBX1 in development and cancers.Frontiers in cell and developmental biology · 2024
    Review
  5. Article
  6. Underexpression ofFrontiers in oncology · 2022
    Article
  7. Article
  8. Article
  9. Article
  10. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Christofer DiakosDepartment of Epidemiology and Biostatistics, University of California San Francisco, San Francisco, California, United States of America ; Department of Pediatrics, St Anna Children's Hospital, Medical University of Vienna, Vienna, Austria.
Yuanyuan XiaoDepartment of Epidemiology and Biostatistics, University of California San Francisco, San Francisco, California, United States of America.
Shichun ZhengDepartment of Epidemiology and Biostatistics, University of California San Francisco, San Francisco, California, United States of America ; Department of Neurosurgery, University of California San Francisco, San Francisco, California, United States of America.
Leo KagerDepartment of Pediatrics, St Anna Children's Hospital, Medical University of Vienna, Vienna, Austria.
Michael DworzakDepartment of Pediatrics, St Anna Children's Hospital, Medical University of Vienna, Vienna, Austria ; Children's Cancer Research Institute, St Anna Kinderkrebsforschung, Vienna, Austria.
Joseph L WiemelsDepartment of Epidemiology and Biostatistics, University of California San Francisco, San Francisco, California, United States of America.
University of California, San Francisco · USMedical University of Vienna · AT

Funding

Genome-Wide Association Study of Childhood Leukemia by Hispanic StatusR01CA155461 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MA, XIAOMEI, WIEMELS, JOSEPH LEO · 2011 to 2014
$4.1M
BACKTRACKING TRANSLOCATIONS IN CHILDHOOD LEUKEMIAR01CA089032 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WIEMELS, JOSEPH LEO · 2001 to 2006
$1.6M
NCI NIH HHS NIH-NCI-R01CA089032NCI NIH HHS NIH-NCI-R01CA155461NCI NIH HHS R01 CA089032NCI NIH HHS R01 CA155461
6 · The paper itself

Abstract

E2A-PBX1 is expressed as a result of the t(1;19) chromosomal translocation in nearly 5% of cases of childhood acute lymphoblastic leukemia. The E2A-PBX1 chimeric transcription factor contains the N-terminal transactivation domain of E2A (TCF3) fused to the C-terminal DNA-binding homeodomain of PBX1. While there is no doubt of its oncogenic potential, the mechanisms of E2A-PBX1-mediated pre-B cell transformation and the nature of direct E2A-PBX1 target genes and pathways remain largely unknown. Herein we used chromatin immunoprecipitation assays (ChIP-chip) to identify direct targets of E2A-PBX1, and we used gene expression arrays of siRNA E2A-PBX1-silenced cells to evaluate changes in expression induced by the fusion protein. Combined ChIP-chip and expression data analysis gave rise to direct and functional targets of E2A-PBX1. Further we observe that the set of ChIP-chip identified E2A-PBX1 targets show a collective down-regulation trend in the E2A-PBX1 silenced samples compared to controls suggesting an activating role of this fusion transcription factor. Our data suggest that the expression of the E2A-PBX1 fusion gene interferes with key regulatory pathways and functions of hematopoietic biology. Among these are members of the WNT and apoptosis/cell cycle control pathways, and thus may comprise an essential driving force for the propagation and maintenance of the leukemic phenotype. These findings may also provide evidence of potentially attractive therapeutic targets.

Indexed as

Gene Expression Regulation, LeukemicBinding SitesCell Line, TumorChromatin ImmunoprecipitationChromosome DeletionChromosomes, Human, Pair 9Gene Regulatory NetworksHomeodomain ProteinsHumansLeukemiaNucleotide MotifsOncogene Proteins, FusionPosition-Specific Scoring MatricesPrecursor B-Cell Lymphoblastic Leukemia-LymphomaPromoter Regions, GeneticProtein BindingE2A-Pbx1 fusion proteinHomeodomain ProteinsOncogene Proteins, FusionTranscription Factors

Identifiers

PMID24503810
PMCPMC3913655
OpenAlexW2036284757

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.