Evidence map›Paper›PMID 24503084›Full record

ArticleVirology2014

Orsay virus utilizes ribosomal frameshifting to express a novel protein that is incorporated into virions.

Hongbing Jiang, Carl J Franz, Guang Wu, Hilary Renshaw, Guoyan Zhao, Andrew E Firth, David Wang

Abstract read
In one paragraph

Article in Virology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed.

  1. Article
  2. Article
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  4. Article
  5. The interplay betweeniScience · 2025
    Article
  6. Article
  7. Article
  8. Orsay virus variants isolated from wildMicrobiology resource announcements · 2025
    Article
  9. Article
  10. Article
  11. Article
  12. Orsay virus infection rate declines with age inmicroPublication biology · 2025
    Article
  13. Article
  14. Orsay virus infection increasesBiology letters · 2024
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Hongbing JiangDepartments of Molecular Microbiology and Pathology & Immunology, Washington University in St. Louis School of Medicine, St. Louis, MO 63110, United States.
Carl J FranzDepartments of Molecular Microbiology and Pathology & Immunology, Washington University in St. Louis School of Medicine, St. Louis, MO 63110, United States.
Guang WuDepartments of Molecular Microbiology and Pathology & Immunology, Washington University in St. Louis School of Medicine, St. Louis, MO 63110, United States.
Hilary RenshawDepartments of Molecular Microbiology and Pathology & Immunology, Washington University in St. Louis School of Medicine, St. Louis, MO 63110, United States.
Guoyan ZhaoDepartments of Molecular Microbiology and Pathology & Immunology, Washington University in St. Louis School of Medicine, St. Louis, MO 63110, United States.
Andrew E FirthDepartment of Pathology, University of Cambridge, Cambridge CB2 1QP, United Kingdom.
David WangDepartments of Molecular Microbiology and Pathology & Immunology, Washington University in St. Louis School of Medicine, St. Louis, MO 63110, United States. Electronic address: davewang@borcim.wustl.edu.

Funding

Wellcome TrustWellcome Trust 088789
6 · The paper itself

Abstract

Orsay virus is the first identified virus that is capable of naturally infecting Caenorhabditis elegans. Although it is most closely related to nodaviruses, Orsay virus differs from nodaviruses in its genome organization. In particular, the Orsay virus RNA2 segment encodes a putative novel protein of unknown function, termed delta, which is absent from all known nodaviruses. Here we present evidence that Orsay virus utilizes a ribosomal frameshifting strategy to express a novel fusion protein from the viral capsid (alpha) and delta ORFs. Moreover, the fusion protein was detected in purified virus fractions, demonstrating that it is most likely incorporated into Orsay virions. Furthermore, N-terminal sequencing of both the fusion protein and the capsid protein demonstrated that these proteins must be translated from a non-canonical initiation site. While the function of the alpha-delta fusion remains cryptic, these studies provide novel insights into the fundamental properties of this new clade of viruses.

Indexed as

Frameshifting, RibosomalAmino Acid SequenceBase SequenceCapsid ProteinsMolecular Sequence DataNodaviridaeProtein BiosynthesisSequence AlignmentViral ProteinsVirionCapsid ProteinsViral ProteinsCaenorhabditis elegansMass spectrometryOrsay virusRibosomal frameshifting

Identifiers

PMID24503084
PMCPMC3969245

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.