Evidence map›Paper›PMID 24502977›Full record

ArticleThe EMBO journal2014

Ibf1 and Ibf2 are novel CP190-interacting proteins required for insulator function.

Sergi Cuartero, Ujué Fresán, Oscar Reina, Evarist Planet, M Lluisa Espinàs

Abstract read
In one paragraph

Article in The EMBO journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 82 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Sergi CuarteroInstitute of Molecular Biology of Barcelona IBMB-CSIC, and Institute for Research in Biomedicine IRB, Barcelona, Spain.
Ujué Fresán
Oscar Reina
Evarist Planet
M Lluisa Espinàs
Consejo Superior de Investigaciones Científicas · ESInstitute for Research in Biomedicine · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Insulators are DNA-protein complexes that play a central role in chromatin organization and regulation of gene expression. In Drosophila different proteins, dCTCF, Su(Hw), and BEAF bind to specific subsets of insulators most of them having in common CP190. It has been shown that there are a number of CP190-binding sites that are not shared with any other known insulator protein, suggesting that other proteins could cooperate with CP190 to regulate insulator activity. Here we report on the identification of two previously uncharacterized proteins as CP190-interacting proteins, that we have named Ibf1 and Ibf2. These proteins localize at insulator bodies and associate with chromatin at CP190-binding sites throughout the genome. We also show that Ibf1 and Ibf2 are DNA-binding proteins that form hetero-oligomers that mediate CP190 binding to chromatin. Moreover, Ibf1 and Ibf2 are necessary for insulator activity in enhancer-blocking assays and Ibf2 null mutation cause a homeotic phenotype. Taken together our data reveal a novel pathway of CP190 recruitment to chromatin that is required for insulator activity.

Indexed as

Amino Acid SequenceAnimalsBase SequenceBlotting, WesternChromatin ImmunoprecipitationDNA-Binding ProteinsDNA PrimersDrosophilaDrosophila ProteinsElectrophoretic Mobility Shift AssayGene Expression ProfilingImmunoprecipitationInsulator ElementsMicrotubule-Associated ProteinsMolecular Sequence DataMultiprotein ComplexesCP190 protein, DrosophilaDNA-Binding ProteinsDNA PrimersDrosophila ProteinsIbf1 protein, DrosophilaIbf2 protein, DrosophilaMicrotubule-Associated ProteinsMultiprotein ComplexesNuclear Proteins

Identifiers

PMID24502977
PMCPMC3989656
OpenAlexW2009529118

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.