Evidence map›Paper›PMID 24501641›Full record

ArticleStandards in genomic sciences2013

Staphylococcus aureus subsp. anaerobius strain ST1464 genome sequence.

Haitham Elbir, Catherine Robert, Ti Thien Nguyen, Grégory Gimenez, Sulieman M El Sanousi, Jan-Ingmar Flock, Didier Raoult, Michel Drancourt

Open access · goldAbstract read
In one paragraph

Article in Standards in genomic sciences, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 25 citations in OpenAlex.

  1. TheJournal of clinical microbiology · 2025
    Review
  2. First whole genome sequencing ofOpen veterinary journal · 2024
    Article
  3. Staphylococcal mastitis in dairy cows.Frontiers in veterinary science · 2024
    Review
  4. A Method to Directly IdentifyFoods (Basel, Switzerland) · 2023
    Article
  5. Article
  6. Article
  7. Rapid differentiation of Staphylococcus aureus subspecies based on MALDI-TOF MS profiles.Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Haitham ElbirAix Marseille Université, URMITE, Marseille, France.
Catherine RobertAix Marseille Université, URMITE, Marseille, France.
Ti Thien NguyenAix Marseille Université, URMITE, Marseille, France.
Grégory GimenezAix Marseille Université, URMITE, Marseille, France.
Sulieman M El SanousiFaculty of Veterinary Medicine, University of Khartoum, Sudan.
Jan-Ingmar FlockDepartment of Microbiology, Tumor and Cell Biology, Stockholm, Sweden.
Didier RaoultAix Marseille Université, URMITE, Marseille, France.
Michel DrancourtAix Marseille Université, URMITE, Marseille, France.
Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes · FRAix-Marseille Université · FRUniversity of Khartoum · SD

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Staphylococcus aureus subsp. anaerobius is responsible for Morel's disease in animals and a cause of abscess in humans. It is characterized by a microaerophilic growth, contrary to the other strains of S. aureus. The 2,604,446-bp genome (32.7% GC content) of S. anaerobius ST1464 comprises one chromosome and no plasmids. The chromosome contains 2,660 open reading frames (ORFs), 49 tRNAs and three complete rRNAs, forming one complete operon. The size of ORFs ranges between 100 to 4,600 bp except for two ORFs of 6,417 and 7,173 bp encoding segregation ATPase and non-ribosomal peptide synthase, respectively. The chromosome harbors Staphylococcus phage 2638A genome and incomplete Staphylococcus phage genome PT1028, but no detectable CRISPRS. The antibiotic resistance gene for tetracycline was found although Staphylococcus aureus subsp. anaerobius is susceptible to tetracycline in-vitro. Intact oxygen detoxification genes encode superoxide dismutase and cytochrome quinol oxidase whereas the catalase gene is impaired by a stop codon. Based on the genome, in-silico multilocus sequence typing indicates that S. aureus subsp. anaerobius emerged as a clone separated from all other S. aureus strains, illustrating host-adaptation linked to missing functions. Availability of S. aureus subsp. anaerobius genome could prompt the development of post-genomic tools for its rapid discrimination from S. aureus.

Indexed as

genomeMorel’s diseaseSOLiDStaphylococcus aureus subsp. anaerobius

Identifiers

PMID24501641
PMCPMC3910551
OpenAlexW2029356458

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.