Evidence map›Paper›PMID 24501637›Full record

ArticleStandards in genomic sciences2013

Draft genome sequence of Francisella tularensis subsp. holarctica BD11-00177.

Jordy P M Coolen, Andreas Sjödin, Boulos Maraha, Gerard F Hajer, Mats Forsman, Ellen Verspui, Hendrina M E Frenay, Daan W Notermans, Maaike C de Vries, Frans A G Reubsaet and 2 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Standards in genomic sciences, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Strengthening the genomic surveillance ofFrontiers in microbiology · 2023
    Article
  2. Phylogeographic Distribution of Human and HareFrontiers in cellular and infection microbiology · 2019
    Article
  3. Review
  4. Long-range dispersal movedMicrobial genomics · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Jordy P M CoolenTNO, The Netherlands.
Andreas SjödinDivision for CBRN Defence and Security, FOI - Swedish Defence Research Agency, Umeå, Sweden.
Boulos MarahaDepartment of Medical Microbiology, Beatrix Hospital, Gorinchem and Albert Schweitzer Hospital, Dordrecht, The Netherlands.
Gerard F HajerDepartment of Surgery, Beatrix Hospital, Gorinchem, The Netherlands.
Mats ForsmanDivision for CBRN Defence and Security, FOI - Swedish Defence Research Agency, Umeå, Sweden.
Ellen VerspuiPublic Health Service Zuid Holland Zuid, Dordrecht, The Netherlands.
Hendrina M E FrenayDepartment of Medical Microbiology, Beatrix Hospital, Gorinchem and Albert Schweitzer Hospital, Dordrecht, The Netherlands.
Daan W NotermansDiagnostic Laboratory for Infectious Diseases and Perinatal Screening (LIS), Center for Infectious Disease Control, National Institute of Public Health and the Environment (RIVM), Bilthoven, The Netherlands.
Maaike C de VriesDiagnostic Laboratory for Infectious Diseases and Perinatal Screening (LIS), Center for Infectious Disease Control, National Institute of Public Health and the Environment (RIVM), Bilthoven, The Netherlands.
Frans A G ReubsaetDiagnostic Laboratory for Infectious Diseases and Perinatal Screening (LIS), Center for Infectious Disease Control, National Institute of Public Health and the Environment (RIVM), Bilthoven, The Netherlands.
Armand PaauwTNO, The Netherlands.
Guus RoeselersTNO, The Netherlands.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Francisella tularensis is a facultative intracellular bacterium in the class Gammaproteobacteria. This strain is of interest because it is the etiologic agent of tularemia and a highly virulent category A biothreat agent. Here we describe the draft genome sequence and annotation of Francisella tularensis subsp. holarctica BD11-00177, isolated from the first case of indigenous tularemia detected in The Netherlands since 1953. Whole genome DNA sequence analysis assigned this isolate to the genomic group B.FTNF002-00, which previously has been exclusively reported from Spain, France, Italy, Switzerland and Germany. Automatic annotation of the 1,813,372 bp draft genome revealed 2,103 protein-coding and 46 RNA genes.

Indexed as

biodefenceNetherlandsphylogeographytularaemiazoonotic infection

Identifiers

PMID24501637
PMCPMC3910693

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.