Evidence map›Paper›PMID 24501628›Full record

ArticleStandards in genomic sciences2013

Complete genome sequence of Ilumatobacter coccineum YM16-304(T.).

Shun Fujinami, Hiromi Takarada, Hiroaki Kasai, Mitsuo Sekine, Seiha Omata, Takeshi Harada, Rieko Fukai, Akira Hosoyama, Hiroshi Horikawa, Yumiko Kato and 2 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Standards in genomic sciences, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Bacterial Microbiota ofMicroorganisms · 2023
    Article
  2. Structural Comparison of a Promiscuous and a Highly Specific Sucrose 6International journal of molecular sciences · 2019
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Shun FujinamiBiological Resource Center, National Institute of Technology and Evaluation, Shibuya, Tokyo, Japan ; Bio-Nano Electronics Research Centre, Toyo University, 2100 Kujirai, Kawagoe Saitama, Japan.
Hiromi TakaradaBiological Resource Center, National Institute of Technology and Evaluation, Shibuya, Tokyo, Japan.
Hiroaki KasaiMarine Biosciences Kamaishi Research Laboratory, Kitasato University, Ofunato, Iwate, Japan.
Mitsuo SekineBiological Resource Center, National Institute of Technology and Evaluation, Shibuya, Tokyo, Japan.
Seiha OmataBiological Resource Center, National Institute of Technology and Evaluation, Shibuya, Tokyo, Japan.
Takeshi HaradaBiological Resource Center, National Institute of Technology and Evaluation, Shibuya, Tokyo, Japan.
Rieko FukaiBiological Resource Center, National Institute of Technology and Evaluation, Shibuya, Tokyo, Japan.
Akira HosoyamaBiological Resource Center, National Institute of Technology and Evaluation, Shibuya, Tokyo, Japan.
Hiroshi HorikawaBiological Resource Center, National Institute of Technology and Evaluation, Shibuya, Tokyo, Japan.
Yumiko KatoBiological Resource Center, National Institute of Technology and Evaluation, Shibuya, Tokyo, Japan.
Hidekazu NakazawaBiological Resource Center, National Institute of Technology and Evaluation, Shibuya, Tokyo, Japan.
Nobuyuki FujitaBiological Resource Center, National Institute of Technology and Evaluation, Shibuya, Tokyo, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ilumatobacter coccineum YM16-304(T) (=NBRC 103263(T)) is a novel marine actinobacterium isolated from a sand sample collected at a beach in Shimane Prefecture, Japan. Strain YM16-304(T) is the type strain of the species. Phylogenetically, strain YM16-304(T) is close to Ilumatobacter nonamiense YM16-303(T) (=NBRC 109120(T)), Ilumatobacter fluminis YM22-133(T) and some uncultured bacteria including putative marine sponge symbionts. Whole genome sequence of these species has not been reported. Here we report the complete genome sequence of strain YM16-304(T). The 4,830,181 bp chromosome was predicted to encode a total of 4,291 protein-coding genes.

Indexed as

aerobicmarine spongemesophilic

Identifiers

PMID24501628
PMCPMC3910706

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.