Evidence map›Paper›PMID 24501625›Full record

ArticleStandards in genomic sciences2013

Genome sequence of the Leisingera aquimarina type strain (DSM 24565(T)), a member of the marine Roseobacter clade rich in extrachromosomal elements.

Thomas Riedel, Hazuki Teshima, Jörn Petersen, Anne Fiebig, Karen Davenport, Hajnalka Daligault, Tracy Erkkila, Wei Gu, Christine Munk, Yan Xu and 13 more

Abstract read
In one paragraph

Article in Standards in genomic sciences, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Complete Genome Sequence ofMicrobiology resource announcements · 2019
    Article
  3. Article
  4. Draft genome sequence of the marineStandards in genomic sciences · 2016
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
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  11. Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors.

Thomas RiedelHZI - Helmholtz Centre for Infection Research, Braunschweig, Germany.
Hazuki TeshimaLos Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA.
Jörn PetersenLeibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.
Anne FiebigLeibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.
Karen DavenportLos Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA.
Hajnalka DaligaultLos Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA.
Tracy ErkkilaLos Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA.
Wei GuLos Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA.
Christine MunkLos Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA.
Yan XuLos Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA.
Amy ChenBiological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Amrita PatiDOE Joint Genome Institute, Walnut Creek, California, USA.
Natalia IvanovaDOE Joint Genome Institute, Walnut Creek, California, USA.
Lynne A GoodwinLos Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA ; DOE Joint Genome Institute, Walnut Creek, California, USA.
Patrick ChainLos Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA.
John C DetterLos Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA ; DOE Joint Genome Institute, Walnut Creek, California, USA.
Manfred RohdeHZI - Helmholtz Centre for Infection Research, Braunschweig, Germany.
Sabine GronowLeibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.
Nikos C KyrpidesDOE Joint Genome Institute, Walnut Creek, California, USA.
Tanja WoykeDOE Joint Genome Institute, Walnut Creek, California, USA.
Markus GökerLeibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.
Thorsten BrinkhoffInstitute for Chemistry and Biology of the Marine Environment (ICBM), Oldenburg, Germany.
Hans-Peter KlenkLeibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Leisingera aquimarina Vandecandelaere et al. 2008 is a member of the genomically well characterized Roseobacter clade within the family Rhodobacteraceae. Representatives of the marine Roseobacter clade are metabolically versatile and involved in carbon fixation and biogeochemical processes. They form a physiologically heterogeneous group, found predominantly in coastal or polar waters, especially in symbiosis with algae, in microbial mats, in sediments or associated with invertebrates. Here we describe the features of L. aquimarina DSM 24565(T) together with the permanent-draft genome sequence and annotation. The 5,344,253 bp long genome consists of one chromosome and an unusually high number of seven extrachromosomal elements and contains 5,129 protein-coding and 89 RNA genes. It was sequenced as part of the DOE Joint Genome Institute Community Sequencing Program 2010 and of the activities of the Transregional Collaborative Research Centre 51 funded by the German Research Foundation (DFG).

Indexed as

Alphaproteobacteriabiofilmcarbon monoxide utilizationhalotolerantheterotrophicmarineovoid-shapedplasmidquorum sensingRhodobacteraceaethiosulfate oxidation

Identifiers

PMID24501625
PMCPMC3910692

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.