Evidence map›Paper›PMID 24501624›Full record

ArticleStandards in genomic sciences2013

Complete genome sequence of Dehalobacter restrictus PER-K23(T.).

Thomas Kruse, Julien Maillard, Lynne Goodwin, Tanja Woyke, Hazuki Teshima, David Bruce, Chris Detter, Roxanne Tapia, Cliff Han, Marcel Huntemann and 13 more

Open access · goldAbstract read
In one paragraph

Article in Standards in genomic sciences, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
6.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
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  4. Pangenomic insights intoMicrobial genomics · 2024
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  5. FromApplied and environmental microbiology · 2024
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  10. Microbial degradation of chloroethenes: a review.Environmental science and pollution research international · 2017
    Review
  11. Genome Sequence ofGenome announcements · 2017
    Article
  12. Isolation and Characterization ofFrontiers in microbiology · 2017
    Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. The restricted metabolism of the obligate organohalide respiring bacterium Dehalobacter restrictus: lessons from tiered functional genomics.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 4 institutions in 3 countries.

Thomas KruseWageningen University, Agrotechnology and Food Sciences, Laboratory of Microbiology, Dreijenplein 10, NL-6703 HB Wageningen, The Netherlands.
Julien MaillardEcole Polytechnique Fédérale de Lausanne (EPFL), School of Architecture, Civil and Environmental Engineering, Laboratory for Environmental Biotechnology, Station 6, CH-1015 Lausanne, Switzerland.
Lynne GoodwinDOE Joint Genome Institute, Walnut Creek, California, USA ; Los Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA.
Tanja WoykeDOE Joint Genome Institute, Walnut Creek, California, USA.
Hazuki TeshimaDOE Joint Genome Institute, Walnut Creek, California, USA ; Los Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA.
David BruceDOE Joint Genome Institute, Walnut Creek, California, USA ; Los Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA.
Chris DetterDOE Joint Genome Institute, Walnut Creek, California, USA ; Los Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA.
Roxanne TapiaDOE Joint Genome Institute, Walnut Creek, California, USA ; Los Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA.
Cliff HanDOE Joint Genome Institute, Walnut Creek, California, USA ; Los Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA.
Marcel HuntemannDOE Joint Genome Institute, Walnut Creek, California, USA.
Chia-Lin WeiDOE Joint Genome Institute, Walnut Creek, California, USA.
James HanDOE Joint Genome Institute, Walnut Creek, California, USA.
Amy ChenDOE Joint Genome Institute, Walnut Creek, California, USA.
Nikos KyrpidesDOE Joint Genome Institute, Walnut Creek, California, USA.
Ernest SzetoDOE Joint Genome Institute, Walnut Creek, California, USA.
Victor MarkowitzDOE Joint Genome Institute, Walnut Creek, California, USA.
Natalia IvanovaDOE Joint Genome Institute, Walnut Creek, California, USA.
Ioanna PaganiDOE Joint Genome Institute, Walnut Creek, California, USA.
Amrita PatiDOE Joint Genome Institute, Walnut Creek, California, USA.
Sam PitluckDOE Joint Genome Institute, Walnut Creek, California, USA.
Matt NolanDOE Joint Genome Institute, Walnut Creek, California, USA.
Christof HolligerEcole Polytechnique Fédérale de Lausanne (EPFL), School of Architecture, Civil and Environmental Engineering, Laboratory for Environmental Biotechnology, Station 6, CH-1015 Lausanne, Switzerland.
Hauke SmidtWageningen University, Agrotechnology and Food Sciences, Laboratory of Microbiology, Dreijenplein 10, NL-6703 HB Wageningen, The Netherlands.
Joint Genome Institute · USÉcole Polytechnique Fédérale de Lausanne · CHWageningen University & Research · NLLos Alamos National Laboratory · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dehalobacter restrictus strain PER-K23 (DSM 9455) is the type strain of the species Dehalobacter restrictus. D. restrictus strain PER-K23 grows by organohalide respiration, coupling the oxidation of H2 to the reductive dechlorination of tetra- or trichloroethene. Growth has not been observed with any other electron donor or acceptor, nor has fermentative growth been shown. Here we introduce the first full genome of a pure culture within the genus Dehalobacter. The 2,943,336 bp long genome contains 2,826 protein coding and 82 RNA genes, including 5 16S rRNA genes. Interestingly, the genome contains 25 predicted reductive dehalogenase genes, the majority of which appear to be full length. The reductive dehalogenase genes are mainly located in two clusters, suggesting a much larger potential for organohalide respiration than previously anticipated.

Indexed as

anaerobeDehalobacter restrictus type strainorganohalide respirationPCEreductive dehalogenasesTCE

Identifiers

PMID24501624
PMCPMC3910700
OpenAlexW1967148090

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.