Evidence map›Paper›PMID 24500404›Full record

ArticleScience translational medicine2014

Molecular network analysis of endometriosis reveals a role for c-Jun-regulated macrophage activation.

Michael T Beste, Nicole Pfäffle-Doyle, Emily A Prentice, Stephanie N Morris, Douglas A Lauffenburger, Keith B Isaacson, Linda G Griffith

Abstract read
In one paragraph

Article in Science translational medicine, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 84 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
84citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

84 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Trial
  3. Decreased PD-1Scandinavian journal of immunology · 2026
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  5. Review
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  9. Lipidomic profiling of endometrial cancer using desorption electrospray ionization mass spectrometry imaging.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
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  19. Review
  20. The involvement of peritoneal GATA6Frontiers in immunology · 2024
    Article

24 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Michael T BesteDepartment of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Nicole Pfäffle-Doyle
Emily A Prentice
Stephanie N Morris
Douglas A Lauffenburger
Keith B Isaacson
Linda G Griffith

Funding

TOXICOLOGY CORE UNITP30ES002109 · NIEHS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI LEVINE, STUART S · 1985 to 2020
$25.6M
Perfused 3D Tissue Surrogates for Complex Cell-Cell Communication SystemsR01EB010246 · NIBIB · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GRIFFITH, LINDA G · 2009 to 2013
$3.3M
NIBIB NIH HHS R01 EB010246NIBIB NIH HHS R01EB10246NIEHS NIH HHS P30 ES002109
6 · The paper itself

Abstract

Clinical management of endometriosis is limited by the complex relationship between symptom severity, heterogeneous surgical presentation, and variability in clinical outcomes. As a complement to visual classification schemes, molecular profiles of disease activity may improve risk stratification to better inform treatment decisions and identify new approaches to targeted treatment. We use a network analysis of information flow within and between inflammatory cells to discern consensus behaviors characterizing patient subpopulations. Unsupervised multivariate analysis of cytokine profiles quantified by multiplex immunoassays identified a subset of patients with a shared "consensus signature" of 13 elevated cytokines that was associated with common clinical features of endometriosis, but was not observed among patient subpopulations defined by morphologic presentation alone. Enrichment analysis of consensus markers reinforced the primacy of peritoneal macrophage infiltration and activation, which was demonstrably elevated in ex vivo cultures. Although familiar targets of the nuclear factor κB family emerged among overrepresented transcriptional binding sites for consensus markers, our analysis provides evidence for an unexpected contribution from c-Jun, c-Fos, and AP-1 effectors of mitogen-associated kinase signaling. Their crucial involvement in propagation of macrophage-driven inflammatory networks was confirmed via targeted inhibition of upstream kinases. Collectively, these analyses suggest a clinically relevant inflammatory network that may serve as an objective measure for guiding treatment decisions for endometriosis management, and in the future may provide a mechanistic endpoint for assessing efficacy of new agents aimed at curtailing inflammatory mechanisms that drive disease progression.

Indexed as

Gene Regulatory NetworksAdultBiomarkersBiopsy, NeedleCytokinesEndometriosisFemaleGene Expression RegulationGenome, HumanHumansInflammationMacrophage ActivationMacrophages, PeritonealMiddle AgedMultivariate AnalysisProto-Oncogene Proteins c-junBiomarkersCytokinesProto-Oncogene Proteins c-junTrans-Activators

Identifiers

PMID24500404
PMCPMC4118592

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.