Evidence map›Paper›PMID 24500196›Full record

ArticleNucleic acids research2014

Direct activation of human and mouse Oct4 genes using engineered TALE and Cas9 transcription factors.

Jiabiao Hu, Yong Lei, Wing-Ki Wong, Senquan Liu, Kai-Chuen Lee, Xiangjun He, Wenxing You, Rui Zhou, Jun-Tao Guo, Xiongfong Chen and 5 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 79 papers.

0numbers the graph read from it
0cells of the map it votes in
79citing papers in PubMed
10.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

79 citing papers in PubMed, 145 citations in OpenAlex.

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  14. Evolving AAV-delivered therapeutics towards ultimate cures.Journal of molecular medicine (Berlin, Germany) · 2021
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  15. Correction of Heritable Epigenetic Defects Using Editing Tools.International journal of molecular sciences · 2021
    Review
  16. Article
  17. Review
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  19. Epigenetic Control of a Local Chromatin Landscape.International journal of molecular sciences · 2020
    Review
  20. Article

19 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 2 countries.

Jiabiao HuKey Laboratory for Regenerative Medicine, Ministry of Education, School of Biomedical Sciences, Faculty of Medicine, The Chinese University of Hong Kong, Hong Kong SAR, China, SBS Core Laboratory, CUHK Shenzhen Research Institute, Shenzhen, China, Bone Marrow Transplantation Centre, First Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang Province, China, Department of Bioinformatics and Genomics, The University of North Carolina at Charlotte, Charlotte, NC 28223, USA, Advanced Biomedical Computing Center, National Cancer Institute, National Institutes of Health, Frederick, MD 21702, USA, Li Ka Shing Institute of Health Sciences, The Chinese University of Hong Kong, Shatin, NT, Hong Kong SAR, China and Department of Chemical Pathology, The Chinese University of Hong Kong, Prince of Wales Hospital, Hong Kong SAR, China.
Yong Lei
Wing-Ki Wong
Senquan Liu
Kai-Chuen Lee
Xiangjun He
Wenxing You
Rui Zhou
Jun-Tao Guo
Xiongfong Chen
Xianlu Peng
Hao Sun
He Huang
Hui Zhao
Bo Feng
Prince of Wales Hospital · CNChinese University of Hong Kong, Shenzhen · CNZhejiang University · CNUniversity of North Carolina at Charlotte · USChinese University of Hong Kong · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The newly developed transcription activator-like effector protein (TALE) and clustered regularly interspaced short palindromic repeats/Cas9 transcription factors (TF) offered a powerful and precise approach for modulating gene expression. In this article, we systematically investigated the potential of these new tools in activating the stringently silenced pluripotency gene Oct4 (Pou5f1) in mouse and human somatic cells. First, with a number of TALEs and sgRNAs targeting various regions in the mouse and human Oct4 promoters, we found that the most efficient TALE-VP64s bound around -120 to -80 bp, while highly effective sgRNAs targeted from -147 to -89-bp upstream of the transcription start sites to induce high activity of luciferase reporters. In addition, we observed significant transcriptional synergy when multiple TFs were applied simultaneously. Although individual TFs exhibited marginal activity to up-regulate endogenous gene expression, optimized combinations of TALE-VP64s could enhance endogenous Oct4 transcription up to 30-fold in mouse NIH3T3 cells and 20-fold in human HEK293T cells. More importantly, the enhancement of OCT4 transcription ultimately generated OCT4 proteins. Furthermore, examination of different epigenetic modifiers showed that histone acetyltransferase p300 could enhance both TALE-VP64 and sgRNA/dCas9-VP64 induced transcription of endogenous OCT4. Taken together, our study suggested that engineered TALE-TF and dCas9-TF are useful tools for modulating gene expression in mammalian cells.

Indexed as

Transcriptional ActivationAnimalsCells, CulturedGene SilencingHumansMiceOctamer Transcription Factor-3p300-CBP-Associated Factorp300-CBP Transcription FactorsRecombinant Fusion ProteinsRNA, Small UntranslatedTranscription FactorsOctamer Transcription Factor-3p300-CBP-Associated Factorp300-CBP Transcription FactorsPOU5F1 protein, humanPou5f1 protein, mouseRecombinant Fusion ProteinsRNA, Small UntranslatedTranscription Factors

Identifiers

PMID24500196
PMCPMC3985678
OpenAlexW2152102410

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.