Evidence map›Paper›PMID 24499025›Full record

ArticleBMC genomics2014

The effect of dietary fat intake on hepatic gene expression in LG/J AND SM/J mice.

Charlyn G Partridge, Gloria L Fawcett, Bing Wang, Clay F Semenkovich, James M Cheverud

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 30 citations in OpenAlex.

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  11. The effect of dietary fat on behavior in mice.Journal of diabetes and metabolic disorders · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 2 countries.

Charlyn G PartridgeDepartment of Anatomy and Neurobiology, Washington University in St, Louis, St, Louis, MO, USA. cpartri4@uwo.ca.
Gloria L Fawcett
Bing Wang
Clay F Semenkovich
James M Cheverud
Washington University in St. Louis · US

Funding

WU P&FP30DK020579 · NIDDK · WASHINGTON UNIVERSITY · PI Clay F. Semenkovich · 2013 to 2026
$27.1M
A Mouse Model For Complex Human DiseasesR24RR015116 · NCRR · WASHINGTON UNIVERSITY · PI CHEVERUD, JAMES M · 2001 to 2009
$2.6M
DE NOVO LIPOGENESIS AND METABOLIC DISEASER01DK076729 · NIDDK · WASHINGTON UNIVERSITY · PI SEMENKOVICH, CLAY F. · 2007 to 2015
$2.5M
Genetics Basis of Dietary Obesity in MiceR01DK055736 · NIDDK · WASHINGTON UNIVERSITY · PI CHEVERUD, JAMES M · 2000 to 2009
$2.1M
GENETIC BASIS OF DIETARY OBESITY IN MICER56DK055736 · NIDDK · WASHINGTON UNIVERSITY · PI CHEVERUD, JAMES M · 2010 to 2010
$354k
NCRR NIH HHS RR015116NIDDK NIH HHS DK-055736NIDDK NIH HHS P30 DK020579NIDDK NIH HHS R01 DK076729
6 · The paper itself

Abstract

backgroundThe liver plays a major role in regulating metabolic homeostasis and is vital for nutrient metabolism. Identifying the genetic factors regulating these processes could lead to a greater understanding of how liver function responds to a high-fat diet and how that response may influence susceptibilities to obesity and metabolic syndrome. In this study we examine differences in hepatic gene expression between the LG/J and SM/J inbred mouse strains and how gene expression in these strains is affected by high-fat diet. LG/J and SM/J are known to differ in their responses to a high-fat diet for a variety of obesity- and diabetes-related traits, with the SM/J strain exhibiting a stronger phenotypic response to diet.

resultsDietary intake had a significant effect on gene expression in both inbred lines. Genes up-regulated by a high-fat diet were involved in biological processes such as lipid and carbohydrate metabolism; protein and amino acid metabolic processes were down regulated on a high-fat diet. A total of 259 unique transcripts exhibited a significant diet-by-strain interaction. These genes tended to be associated with immune function. In addition, genes involved in biochemical processes related to non-alcoholic fatty liver disease (NAFLD) manifested different responses to diet between the two strains. For most of these genes, SM/J had a stronger response to the high-fat diet than LG/J.

conclusionsThese data show that dietary fat impacts gene expression levels in SM/J relative to LG/J, with SM/J exhibiting a stronger response. This supports previous data showing that SM/J has a stronger phenotypic response to high-fat diet. Based upon these findings, we suggest that SM/J and its cross with the LG/J strain provide a good model for examining non-alcoholic fatty liver disease and its role in metabolic syndrome.

Indexed as

Diet, High-FatAnimalsDiabetes MellitusDown-RegulationFemaleLiverMaleMiceMice, Inbred StrainsNon-alcoholic Fatty Liver DiseaseObesityQuantitative Trait LociUp-Regulation

Identifiers

PMID24499025
PMCPMC4028868
OpenAlexW2080035179

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.