Evidence map›Paper›PMID 24498393›Full record

ArticlePloS one2014

CERKL, a retinal disease gene, encodes an mRNA-binding protein that localizes in compact and untranslated mRNPs associated with microtubules.

Alihamze Fathinajafabadi, Eva Pérez-Jiménez, Marina Riera, Erwin Knecht, Roser Gonzàlez-Duarte

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 31 citations in OpenAlex.

  1. Review
  2. Alternative RNA Splicing in the Retina: Insights and Perspectives.Cold Spring Harbor perspectives in medicine · 2023
    Review
  3. Article
  4. Review
  5. International journal of molecular sciences · 2022
    Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Review
  13. Review
  14. RNA Biology in Retinal Development and Disease.Trends in genetics : TIG · 2018
    Review
  15. Article
  16. The Biological Roles of Translation Initiation Factor 3b.International journal of biological sciences · 2018
    Review
  17. Review
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Alihamze FathinajafabadiLaboratorio de Biología Celular, Centro de Investigación Príncipe Felipe, Valencia, Spain.
Eva Pérez-JiménezLaboratorio de Biología Celular, Centro de Investigación Príncipe Felipe, Valencia, Spain.
Marina RieraDepartament de Genètica, Facultat de Biologia, Universitat de Barcelona, Barcelona, Spain ; Centro de Investigación Biomédica en Red de Enfermedades Raras (CIBERER), Spain.
Erwin KnechtLaboratorio de Biología Celular, Centro de Investigación Príncipe Felipe, Valencia, Spain ; Centro de Investigación Biomédica en Red de Enfermedades Raras (CIBERER), Spain.
Roser Gonzàlez-DuarteDepartament de Genètica, Facultat de Biologia, Universitat de Barcelona, Barcelona, Spain ; Centro de Investigación Biomédica en Red de Enfermedades Raras (CIBERER), Spain.
Centro de Investigacion Principe Felipe · ESCentre for Biomedical Network Research on Rare Diseases · ESCentro de Investigación Biomédica en Red · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The function of CERKL (CERamide Kinase Like), a causative gene of retinitis pigmentosa and cone-rod dystrophy, still awaits characterization. To approach its cellular role we have investigated the subcellular localization and interaction partners of the full length CERKL isoform, CERKLa of 532 amino acids, in different cell lines, including a photoreceptor-derived cell line. We demonstrate that CERKLa is a main component of compact and untranslated mRNPs and that associates with other RNP complexes such as stress granules, P-bodies and polysomes. CERKLa is a protein that binds through its N-terminus to mRNAs and interacts with other mRNA-binding proteins like eIF3B, PABP, HSP70 and RPS3. Except for eIF3B, these interactions depend on the integrity of mRNAs but not of ribosomes. Interestingly, the C125W CERKLa pathological mutant does not interact with eIF3B and is absent from these complexes. Compact mRNPs containing CERKLa also associate with microtubules and are found in neurites of neural differentiated cells. These localizations had not been reported previously for any member of the retinal disorders gene family and should be considered when investigating the pathogenic mechanisms and therapeutical approaches in these diseases.

Indexed as

Alternative SplicingBlotting, WesternCarrier ProteinsCells, CulturedChromatography, LiquidElectrophoretic Mobility Shift AssayFluorescent Antibody TechniqueHumansImmunoprecipitationIn Situ Hybridization, FluorescenceMicroscopy, ConfocalMicrotubulesNeuroblastomaPhosphotransferases (Alcohol Group Acceptor)PolyribosomesProtein IsoformsCarrier Proteinsceramide kinasemessenger ribonucleoproteinPhosphotransferases (Alcohol Group Acceptor)Protein IsoformsRibonucleoproteinsRNA, Messenger

Identifiers

PMID24498393
PMCPMC3912138
OpenAlexW1997734413

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.