Evidence map›Paper›PMID 24498279›Full record

ArticlePloS one2014

Autoimmunity-associated LYP-W620 does not impair thymic negative selection of autoreactive T cells.

Dennis J Wu, Wenbo Zhou, Sarah Enouz, Valeria Orrú, Stephanie M Stanford, Christian J Maine, Novella Rapini, Kristy Sawatzke, Isaac Engel, Edoardo Fiorillo and 5 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 23 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 3 countries.

Dennis J WuDivision of Cellular Biology, La Jolla Institute for Allergy and Immunology, La Jolla, California, United States of America.
Wenbo ZhouCenter for Immunology, Department of Medicine, University of Minnesota, Minneapolis, Minnesota, United States of America.
Sarah EnouzSwiss Vaccine Research Institute, Epalinges, and Division of Immunology and Allergy, Department of Medicine, Lausanne University Hospital, Lausanne, Switzerland.
Valeria OrrúInstitute for Genetic Medicine, University of Southern California, Los Angeles, California, United States of America ; Istituto di Ricerca Genetica e Biomedica (IRGB), CNR, Monserrato, Italy.
Stephanie M StanfordDivision of Cellular Biology, La Jolla Institute for Allergy and Immunology, La Jolla, California, United States of America.
Christian J MaineDepartment of Immunology, The Scripps Research Institute, La Jolla, California, United States of America.
Novella RapiniDivision of Cellular Biology, La Jolla Institute for Allergy and Immunology, La Jolla, California, United States of America.
Kristy SawatzkeCenter for Immunology, Department of Medicine, University of Minnesota, Minneapolis, Minnesota, United States of America.
Isaac EngelDivision of Developmental Immunology, La Jolla Institute for Allergy and Immunology, La Jolla, California, United States of America.
Edoardo FiorilloInstitute for Genetic Medicine, University of Southern California, Los Angeles, California, United States of America ; Istituto di Ricerca Genetica e Biomedica (IRGB), CNR, Monserrato, Italy.
Linda A ShermanDepartment of Immunology, The Scripps Research Institute, La Jolla, California, United States of America.
Mitch KronenbergDivision of Developmental Immunology, La Jolla Institute for Allergy and Immunology, La Jolla, California, United States of America.
Dietmar ZehnSwiss Vaccine Research Institute, Epalinges, and Division of Immunology and Allergy, Department of Medicine, Lausanne University Hospital, Lausanne, Switzerland.
Erik PetersonCenter for Immunology, Department of Medicine, University of Minnesota, Minneapolis, Minnesota, United States of America.
Nunzio BottiniDivision of Cellular Biology, La Jolla Institute for Allergy and Immunology, La Jolla, California, United States of America ; Institute for Genetic Medicine, University of Southern California, Los Angeles, California, United States of America.
La Jolla Institute for Immunology · USUniversity of Minnesota · USScripps Research Institute · USSwiss Vaccine Research Institute · CHUniversity of Southern California · USInstitute of Genetic and Biomedical Research · IT

Funding

Development and Function of NKT CellsR37AI071922 · NIAID · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI KRONENBERG, MITCHELL · 2006 to 2015
$4.9M
PTPN22 AND AUTOIMMUNITYR01AI070544 · NIAID · UNIVERSITY OF SOUTHERN CALIFORNIA · PI BOTTINI, NUNZIO · 2008 to 2019
$4.0M
The Role of IL-17 Axis in Inflammatory MyositisR01AR057781 · NIAMS · MAYO CLINIC ROCHESTER · PI NIEWOLD, TIMOTHY B, PETERSON, ERIK J · 2010 to 2014
$1.6M
Lymphoid Tyrosine Phosphatase and Type I DiabetesR21AI065643 · NIAID · UNIVERSITY OF SOUTHERN CALIFORNIA · PI BOTTINI, NUNZIO · 2006 to 2007
$463k
NIAID NIH HHS R01 AI070544NIAID NIH HHS R01AI070544NIAID NIH HHS R21 AI065643NIAID NIH HHS R21AI065643NIAID NIH HHS R37 AI071922NIAID NIH HHS R37AI71922NIAMS NIH HHS R01 AR057781NIAMS NIH HHS R01AR057781
6 · The paper itself

Abstract

A C1858T (R620W) variation in the PTPN22 gene encoding the tyrosine phosphatase LYP is a major risk factor for human autoimmunity. LYP is a known negative regulator of signaling through the T cell receptor (TCR), and murine Ptpn22 plays a role in thymic selection. However, the mechanism of action of the R620W variant in autoimmunity remains unclear. One model holds that LYP-W620 is a gain-of-function phosphatase that causes alterations in thymic negative selection and/or thymic output of regulatory T cells (Treg) through inhibition of thymic TCR signaling. To test this model, we generated mice in which the human LYP-W620 variant or its phosphatase-inactive mutant are expressed in developing thymocytes under control of the proximal Lck promoter. We found that LYP-W620 expression results in diminished thymocyte TCR signaling, thus modeling a "gain-of-function" of LYP at the signaling level. However, LYP-W620 transgenic mice display no alterations of thymic negative selection and no anomalies in thymic output of CD4(+)Foxp3(+) Treg were detected in these mice. Lck promoter-directed expression of the human transgene also causes no alteration in thymic repertoire or increase in disease severity in a model of rheumatoid arthritis, which depends on skewed thymic selection of CD4(+) T cells. Our data suggest that a gain-of-function of LYP is unlikely to increase risk of autoimmunity through alterations of thymic selection and that LYP likely acts in the periphery perhaps selectively in regulatory T cells or in another cell type to increase risk of autoimmunity.

Indexed as

AutoimmunityAnimalsArginineCD4 AntigensFemaleFlow CytometryForkhead Transcription FactorsHumansLymphocyte ActivationMiceMice, Inbred BALB CMice, Inbred C57BLMice, Inbred ICRMice, TransgenicMutation, MissenseProtein Tyrosine Phosphatase, Non-Receptor Type 22ArginineCD4 AntigensForkhead Transcription FactorsFoxp3 protein, mouseProtein Tyrosine Phosphatase, Non-Receptor Type 22PTPN22 protein, humanReceptors, Antigen, T-CellTryptophan

Identifiers

PMID24498279
PMCPMC3911918
OpenAlexW2165255549

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.