ArticlePloS one2014
The candidate phylum Poribacteria by single-cell genomics: new insights into phylogeny, cell-compartmentation, eukaryote-like repeat proteins, and other genomic features.
Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.
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43 citing papers in PubMed.
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- Distribution and diversity of 'Tectomicrobia', a deep-branching uncultivated bacterial lineage harboring rich producers of bioactive metabolites.ISME communications · 2023Article
- Lineage-specific energy and carbon metabolism of sponge symbionts and contributions to the host carbon pool.The ISME journal · 2022Article
- Genomics and phylogeny of the proposed phylum 'Candidatus Poribacteria' associated with the excavating sponge Thoosa mismalolli.Antonie van Leeuwenhoek · 2021Article
- Comparative Genomics Provides Insight into the Function of Broad-Host Range Sponge Symbionts.mBio · 2021Article
- DNA-stable isotope probing (DNA-SIP) identifies marine sponge-associated bacteria actively utilizing dissolved organic matter (DOM).Environmental microbiology · 2021Article
- Mosaic Evolution of the Phosphopantothenate Biosynthesis Pathway in Bacteria and Archaea.Genome biology and evolution · 2021Article
- Bacteria Cultivated From Sponges and Bacteria Not Yet Cultivated From Sponges-A Review.Frontiers in microbiology · 2021Review
- Multidomain ribosomal protein trees and the planctobacterial origin of neomura (eukaryotes, archaebacteria).Protoplasma · 2020Review
- Characterization of a sponge microbiome using an integrative genome-centric approach.The ISME journal · 2020Article
- Pyrosequencing reveals sponge specific bacterial communities in marine sponges of Red Sea, Saudi Arabia.Saudi journal of biological sciences · 2020Article
- Hiding in Plain Sight: The Globally Distributed Bacterial Candidate Phylum PAUC34f.Frontiers in microbiology · 2020Article
- Cultivation of Bacteria FromFrontiers in microbiology · 2020Article
- A genomic view of the reef-building coral Porites lutea and its microbial symbionts.Nature microbiology · 2019Article
- Comparative Genomics Reveals Metabolic Specificity ofMicroorganisms · 2019Article
- Comparative Genomics Reveals Ecological and Evolutionary Insights into Sponge-AssociatedmSystems · 2019Article
- Vertical transmission of sponge microbiota is inconsistent and unfaithful.Nature ecology & evolution · 2019Article
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Authors and funding
8 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The candidate phylum Poribacteria is one of the most dominant and widespread members of the microbial communities residing within marine sponges. Cell compartmentalization had been postulated along with their discovery about a decade ago and their phylogenetic association to the Planctomycetes, Verrucomicrobia, Chlamydiae superphylum was proposed soon thereafter. In the present study we revised these features based on genomic data obtained from six poribacterial single cells. We propose that Poribacteria form a distinct monophyletic phylum contiguous to the PVC superphylum together with other candidate phyla. Our genomic analyses supported the possibility of cell compartmentalization in form of bacterial microcompartments. Further analyses of eukaryote-like protein domains stressed the importance of such proteins with features including tetratricopeptide repeats, leucin rich repeats as well as low density lipoproteins receptor repeats, the latter of which are reported here for the first time from a sponge symbiont. Finally, examining the most abundant protein domain family on poribacterial genomes revealed diverse phyH family proteins, some of which may be related to dissolved organic posphorus uptake.
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