Evidence map›Paper›PMID 24498081›Full record

ArticlePloS one2014

Crystal structure of an (R)-selective ω-transaminase from Aspergillus terreus.

Andrzej Łyskowski, Christian Gruber, Georg Steinkellner, Martin Schürmann, Helmut Schwab, Karl Gruber, Kerstin Steiner

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 86 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Evolving ω-amine transaminaseApplied and environmental microbiology · 2024
    Article
  6. Article
  7. Article
  8. Engineering Novel (Applied and environmental microbiology · 2022
    Article
  9. Article
  10. Article
  11. Article
  12. Article
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  17. An (Frontiers in bioengineering and biotechnology · 2020
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Andrzej ŁyskowskiACIB GmbH, c/o TU Graz, Graz, Austria.
Christian GruberACIB GmbH, c/o TU Graz, Graz, Austria.
Georg SteinkellnerACIB GmbH, c/o TU Graz, Graz, Austria.
Martin SchürmannDSM, Innovative Synthesis, Geleen, The Netherlands.
Helmut SchwabACIB GmbH, c/o TU Graz, Graz, Austria ; Institute of Molecular Biotechnology, TU Graz, Graz, Austria.
Karl GruberACIB GmbH, c/o TU Graz, Graz, Austria ; Institute of Molecular Biosciences, University of Graz, Graz, Austria.
Kerstin SteinerACIB GmbH, c/o TU Graz, Graz, Austria.
Austrian Centre of Industrial Biotechnology (Austria) · ATGraz University of Technology · ATDSM (Netherlands) · NLUniversity of Graz · AT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chiral amines are important building blocks for the synthesis of pharmaceutical products, fine chemicals, and agrochemicals. ω-Transaminases are able to directly synthesize enantiopure chiral amines by catalysing the transfer of an amino group from a primary amino donor to a carbonyl acceptor with pyridoxal 5'-phosphate (PLP) as cofactor. In nature, (S)-selective amine transaminases are more abundant than the (R)-selective enzymes, and therefore more information concerning their structures is available. Here, we present the crystal structure of an (R)-ω-transaminase from Aspergillus terreus determined by X-ray crystallography at a resolution of 1.6 Å. The structure of the protein is a homodimer that displays the typical class IV fold of PLP-dependent aminotransferases. The PLP-cofactor observed in the structure is present in two states (i) covalently bound to the active site lysine (the internal aldimine form) and (ii) as substrate/product adduct (the external aldimine form) and free lysine. Docking studies revealed that (R)-transaminases follow a dual binding mode, in which the large binding pocket can harbour the bulky substituent of the amine or ketone substrate and the α-carboxylate of pyruvate or amino acids, and the small binding pocket accommodates the smaller substituent.

Indexed as

AminesAspergillusCatalysisCatalytic DomainCrystallography, X-RayKetonesPyruvic AcidSubstrate SpecificityTransaminasesAminesKetonesPyruvic AcidTransaminases

Identifiers

PMID24498081
PMCPMC3907554
OpenAlexW2069790423

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.