Evidence map›Paper›PMID 24498031›Full record

ArticlePloS one2014

Massive withdrawal symptoms and affective vulnerability are associated with variants of the CHRNA4 gene in a subgroup of smokers.

Judit Lazary, Peter Dome, Iren Csala, Gabor Kovacs, Gabor Faludi, Mari Kaunisto, Balazs Dome

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 20 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Withdrawal: Expanding a Key Addiction Construct.Nicotine & tobacco research : official journal of the Society for Research on Nicotine and Tobacco · 2015
    Review
  8. A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.American journal of respiratory and critical care medicine · 2015
    Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 3 countries.

Judit LazaryDepartment of Clinical and Theoretical Mental Health, Semmelweis University, Budapest, Hungary.
Peter DomeDepartment of Clinical and Theoretical Mental Health, Semmelweis University, Budapest, Hungary ; National Institute of Psychiatry and Addictions, Budapest, Hungary.
Iren CsalaDepartment of Clinical and Theoretical Mental Health, Semmelweis University, Budapest, Hungary ; Institute of Behavioral Sciences, Semmelweis University, Budapest, Hungary.
Gabor KovacsDepartment of Tumor Biology, National Koranyi Institute of Pulmonology, Budapest, Hungary.
Gabor FaludiDepartment of Clinical and Theoretical Mental Health, Semmelweis University, Budapest, Hungary.
Mari KaunistoInstitute for Molecular Medicine Finland (FIMM), University of Helsinki, Helsinki, Finland ; Folkhälsan Institute of Genetics, Helsinki, Finland.
Balazs DomeDepartment of Tumor Biology, National Koranyi Institute of Pulmonology, Budapest, Hungary ; Department of Thoracic Surgery, National Institute of Oncology, Budapest, Hungary ; Translational Thoracic Oncology Lab, Department of Thoracic Surgery, Medical University of Vienna, Vienna, Austria.
Semmelweis University · HUNational Institute of Oncology · HUOrszágos Korányi Tbc és Pulmonológiai Intézet · HUUniversity of Helsinki · FI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Heterogeneous phenotypes of complex disorders pose a great challenge for genetic association studies and for the development of personalized treatment strategies. Cluster analysis of phenotypic data has been recently proposed as a reliable auxiliary method for such studies. A cohort of 236 treatment-seeking smokers was investigated after overnight nicotine abstinence. Alpha4 nicotinic acetylcholine receptor (nAChR) subunit-related phenotypes were assessed by the Fagerström Test for Nicotine Dependence (FTND), exhaled carbon monoxide (CO) measurements, the Minnesota Nicotine Withdrawal Scale (MNWS) and the Zung Self-Rating Depression Scale (ZSDS). Seven tag SNPs (single-nucleotide polymorphisms) across CHRNA4 (the gene encoding alpha4 subunit of the nicotinic acetylcholine receptor) were genotyped and two-step cluster analysis was used for phenotypic cluster characterization. Haplotype estimation was determined by HapStat module of R 2.0 software. Three different phenotypic clusters were identified and the C3 cluster was characterized by the highest ZSDS and MNWS scores compared to others. Furthermore, lifetime prevalence of major depression was significantly higher in the C3 cluster (p = 0.019). In genetic association tests, this cluster was also significantly associated with rs3787138 genotypes (p = 0.004) while haplotype analyses of three SNPs (rs3787138, rs1044396, rs3787140) revealed that the risk for C3 phenotype was almost three times higher in GCC haplotype carriers compared to others (pperm = 0.013). This is the first report on a significant association between CHRNA4 variants and a subgroup of smokers characterized by massive withdrawal symptoms and affective vulnerability. Identification of such a phenotypic cluster can be a pivotal step for further pharmacogenetic studies on ligands of the alpha4 nAChR subunit. Our results suggest that performing cluster analysis in genetic association studies can be proposed for complex disorders.

Indexed as

FemaleGenetic Predisposition to DiseaseGenotypeHumansMaleMiddle AgedNicotinePhenotypePolymorphism, Single NucleotideReceptors, NicotinicSelf ReportSmokingSubstance Withdrawal SyndromeNicotineReceptors, Nicotinic

Identifiers

PMID24498031
PMCPMC3907445
OpenAlexW2009475743

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.