Evidence map›Paper›PMID 24497926›Full record

ArticlePloS one2014

Mitochondrial control region alterations and breast cancer risk: a study in South Indian population.

Nageswara Rao Tipirisetti, Suresh Govatati, Priyanka Pullari, Sravanthi Malempati, Murali Krishna Thupurani, Shyam Perugu, Praveen Guruvaiah, Lakshmi Rao K, Raghunadha Rao Digumarti, Varadacharyulu Nallanchakravarthula and 2 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 55 citations in OpenAlex.

  1. Review
  2. Article
  3. Analysis of Mitochondrial Transfer RNA Mutations in Breast Cancer.Balkan journal of medical genetics : BJMG · 2023
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. A Review of the Epidemiology of Breast Cancer in Asia: Focus on Risk Factors.Asian Pacific journal of cancer prevention : APJCP · 2020
    Review
  11. SNHG1 Long Noncoding RNA is Potentially Up-Regulated in Colorectal Adenocarcinoma.Asian Pacific journal of cancer prevention : APJCP · 2020
    Article
  12. Article
  13. Polycystic ovary syndrome and mitochondrial dysfunction.Reproductive biology and endocrinology : RB&E · 2019
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
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4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

12 authors at 6 institutions in 1 country.

Nageswara Rao TipirisettiDepartment of Genetics, Osmania University, Hyderabad, India.
Suresh GovatatiDepartment of Biochemistry, Osmania University, Hyderabad, India.
Priyanka PullariDepartment of Biotechnology, Periyar University, Salem, Tamilnadu, India.
Sravanthi MalempatiDepartment of Biochemistry, DrMRAR PG Center, Krishna University, Nuzvid, India.
Murali Krishna ThupuraniDepartment of Biotechnology, Chaitanya Postgraduate College, Hanamkonda, India.
Shyam PeruguDepartment of Biochemistry, Osmania University, Hyderabad, India.
Praveen GuruvaiahDepartment of Biochemistry, Osmania University, Hyderabad, India.
Lakshmi Rao KCentre for Cellular and Molecular Biology (CCMB), Hyderabad, India.
Raghunadha Rao DigumartiNizam's Institute of Medical Sciences, Hyderabad, India.
Varadacharyulu NallanchakravarthulaDepartment of Biochemistry, Sri Krishnadevaraya University, Anantapur, India.
Manjula BhanooriDepartment of Biochemistry, Osmania University, Hyderabad, India.
Vishnupriya SattiDepartment of Genetics, Osmania University, Hyderabad, India.
Osmania University · INCentre for Cellular and Molecular Biology · INKrishna University · INNizam's Institute of Medical Sciences · INPeriyar University · INSri Krishnadevaraya University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundMitochondrial displacement loop (D-loop) is the hot spot for mitochondrial DNA (mtDNA) alterations which influence the generation of cellular reactive oxygen species (ROS). Association of D-loop alterations with breast cancer has been reported in few ethnic groups; however none of the reports were documented from Indian subcontinent. METHODOLOGY: We screened the entire mitochondrial D-loop region (1124 bp) of breast cancer patients (n = 213) and controls (n = 207) of south Indian origin by PCR-sequencing analysis. Haplotype frequencies for significant loci, the standardized disequilibrium coefficient (D') for pair-wise linkage disequilibrium (LD) were assessed by Haploview Software. PRINCIPAL

findingsWe identified 7 novel mutations and 170 reported polymorphisms in the D-loop region of patients and/or controls. Polymorphisms were predominantly located in hypervariable region I (60%) than in II (30%) of D-loop region. The frequencies of 310'C' insertion (P = 0.018), T16189C (P = 0.0019) variants and 310'C'ins/16189C (P = 0.00019) haplotype were significantly higher in cases than in controls. Furthermore, strong LD was observed between nucleotide position 310 and 16189 in controls (D' = 0.49) as compared to patients (D' = 0.14).

conclusionsMitochondrial D-loop alterations may constitute inherent risk factors for breast cancer development. The analysis of genetic alterations in the D-loop region might help to identify patients at high risk for bad progression, thereby helping to refine therapeutic decisions in breast cancer.

Indexed as

Regulatory Sequences, Nucleic AcidBase SequenceBreast NeoplasmsCase-Control StudiesDNA, MitochondrialDNA Mutational AnalysisFemaleGene FrequencyGenetic Association StudiesHaplotypesHumansIndiaLinkage DisequilibriumMutagenesis, InsertionalPoint MutationPolymorphism, Single NucleotideDNA, Mitochondrial

Identifiers

PMID24497926
PMCPMC3907410
OpenAlexW2022523091

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.