Evidence map›Paper›PMID 24497829›Full record

Trial reportPLoS pathogens2014

RNA-seq analysis of host and viral gene expression highlights interaction between varicella zoster virus and keratinocyte differentiation.

Meleri Jones, Inga R Dry, Dan Frampton, Manuraj Singh, Ravinder K Kanda, Michael B Yee, Paul Kellam, Michael Hollinshead, Paul R Kinchington, Edel A O'Toole and 1 more

Erratum issuedOpen access · goldAbstract readClinical Trial
In one paragraph

Trial report in PLoS pathogens, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
6.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 73 citations in OpenAlex.

  1. Varicella zoster virus infection.Nature reviews. Disease primers · 2026
    Review
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  7. Biological relevance ofMicrobiology and molecular biology reviews : MMBR · 2025
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  9. Generation of theInternational journal of molecular sciences · 2025
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4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Meleri JonesDivision of Infection and Immunity, University College London, London, United Kingdom.
Inga R DryDivision of Infection and Immunity, University College London, London, United Kingdom.
Dan FramptonDivision of Infection and Immunity, University College London, London, United Kingdom.
Manuraj SinghCentre for Cutaneous Research, QMUL, London, United Kingdom.
Ravinder K KandaDivision of Infection and Immunity, University College London, London, United Kingdom.
Michael B YeeDepartment of Ophthalmology and of Molecular Microbiology and Genetics, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America.
Paul KellamDivision of Infection and Immunity, University College London, London, United Kingdom ; Virus Genomics Team, Wellcome Trust Sanger Institute, Cambridge, United Kingdom.
Michael HollinsheadSection of Virology, Faculty of Medicine, Imperial College London, London, United Kingdom.
Paul R KinchingtonDepartment of Ophthalmology and of Molecular Microbiology and Genetics, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America.
Edel A O'TooleCentre for Cutaneous Research, QMUL, London, United Kingdom.
Judith BreuerDivision of Infection and Immunity, University College London, London, United Kingdom.
University College London · GBUniversity of Pittsburgh · USImperial College London · GBWellcome Sanger Institute · GB

Funding

Virus Production and Manipulation of Protein/Gene Expression ModuleP30EY008098 · NEI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Ethan A Rossi · 1989 to 2026
$17.8M
Varicella zoster virus-Induced Pain in a Rat Model of Post-Herpetic NeuralgiaR01NS064022 · NINDS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI KINCHINGTON, PAUL R. · 2009 to 2019
$3.6M
Varicella zoster virus-Induced Pain in a Rat Model of Post-Herpetic NeuralgiaR56NS064022 · NINDS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI KINCHINGTON, PAUL R. · 2015 to 2015
$532k
Medical Research Council G0501446Medical Research Council G0700814Medical Research Council G0900950Medical Research Council G9721629NEI NIH HHS EY08098NEI NIH HHS P30 EY008098NINDS NIH HHS NS064022NINDS NIH HHS R01 NS064022NINDS NIH HHS R56 NS064022Wellcome TrustWellcome Trust 081703/B/06/Z
6 · The paper itself

Abstract

Varicella zoster virus (VZV) is the etiological agent of chickenpox and shingles, diseases characterized by epidermal skin blistering. Using a calcium-induced keratinocyte differentiation model we investigated the interaction between epidermal differentiation and VZV infection. RNA-seq analysis showed that VZV infection has a profound effect on differentiating keratinocytes, altering the normal process of epidermal gene expression to generate a signature that resembles patterns of gene expression seen in both heritable and acquired skin-blistering disorders. Further investigation by real-time PCR, protein analysis and electron microscopy revealed that VZV specifically reduced expression of specific suprabasal cytokeratins and desmosomal proteins, leading to disruption of epidermal structure and function. These changes were accompanied by an upregulation of kallikreins and serine proteases. Taken together VZV infection promotes blistering and desquamation of the epidermis, both of which are necessary to the viral spread and pathogenesis. At the same time, analysis of the viral transcriptome provided evidence that VZV gene expression was significantly increased following calcium treatment of keratinocytes. Using reporter viruses and immunohistochemistry we confirmed that VZV gene and protein expression in skin is linked with cellular differentiation. These studies highlight the intimate host-pathogen interaction following VZV infection of skin and provide insight into the mechanisms by which VZV remodels the epidermal environment to promote its own replication and spread.

Indexed as

Cell DifferentiationChickenpoxFemaleGene Expression Regulation, ViralHerpesvirus 3, HumanHumansKeratinocytesMaleRNA, ViralSequence Analysis, RNAViral ProteinsVirus ReplicationRNA, ViralViral Proteins

Identifiers

PMID24497829
PMCPMC3907375
OpenAlexW2040150395

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.