Evidence map›Paper›PMID 24497701›Full record

ArticleIndian journal of human genetics2013

Genetic variants in the cytochrome P450 2D6 gene in the Sri Lankan population.

T D Praveen Tharanga, C M V Jinadasa, M F Risama, Priyadarshani Galappatthy, R L Jayakody, Vajira H W Dissanayake

Abstract read
In one paragraph

Article in Indian journal of human genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.3field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Genetics and genomic medicine in Sri Lanka.Molecular genetics & genomic medicine · 2019
    Review
  4. Breast cancer (Dove Medical Press) · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

T D Praveen TharangaDepartment of Pharmacology, Faculty of Medicine, University of Colombo, Colombo 00800, Sri Lanka.
C M V JinadasaDepartment of Human Genetics Unit, Faculty of Medicine, University of Colombo, Colombo 00800, Sri Lanka.
M F RisamaDepartment of Human Genetics Unit, Faculty of Medicine, University of Colombo, Colombo 00800, Sri Lanka.
Priyadarshani GalappatthyDepartment of Pharmacology, Faculty of Medicine, University of Colombo, Colombo 00800, Sri Lanka.
R L JayakodyDepartment of Pharmacology, Faculty of Medicine, University of Colombo, Colombo 00800, Sri Lanka.
Vajira H W DissanayakeDepartment of Human Genetics Unit, Faculty of Medicine, University of Colombo, Colombo 00800, Sri Lanka.
University of Colombo · LK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

introductionCytochrome P450 2D6 (CYP2D6) enzymes are involved in the metabolism of a large number of commonly prescribed drugs such as antidepressants and cardiovascular drugs. The CYP2D6 *3, *4 and *14 variants associated with the loss of enzyme function; CYP2D6 *10 and *17 variants with reduced enzyme function; and CYP2D6 *2 variant with no effect on enzyme function. Establishing the frequency of these variant alleles in Sri Lankan population would be useful for optimizing pharmacotherapy with CYP2D6-substrate drugs.

objectiveThe objective of this study was to determine the prevalence of CYP2D6 *2, *3, *4, *10, *14 and *17 variants in the main ethnic groups in the Sri Lankan population. MATERIALS AND

methodsA total of 90 deoxyribonucleic acid (DNA) samples (30 each from Sinhalese, Tamils and Moors) were selected from a DNA resource at the Human Genetic Unit, Faculty of Medicine, University of Colombo. This collection had been made for population genetic studies from a random population based volunteers. Genotyping was performed using published polymerase chain reaction/restriction fragment length polymorphism methods.

resultsThe prevalence of the CYP2D6 variants in Sinhalese, Sri Lankan Tamils and Moors respectively were CYP2D6 *2: 37%, 41.6% and 37.9%; CYP2D6 *3: 60.3%, 45% and 30%; CYP2D6 *4: 21.6%, 6.6% and 8.3%; CYP2D6 *10: 40%, 35% and 44%. CYP2D6 *14 and *17 variants were not identified.

conclusionCYP2D6*3, *4 and *10 variants, which are associated with reduced or loss of CYP2D6 enzyme function were found in our population in significant frequencies. CYP2D6*4, which is reported to be a Caucasian variant was also found in all three ethnic groups.

Indexed as

Allele frequencycytochrome P450 2D6Sri Lankan

Identifiers

PMID24497701
PMCPMC3897131
OpenAlexW2087153105

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.