Evidence map›Paper›PMID 24497544›Full record

ArticleeLife2014

An allosteric Sec61 inhibitor traps nascent transmembrane helices at the lateral gate.

Andrew L Mackinnon, Ville O Paavilainen, Ajay Sharma, Ramanujan S Hegde, Jack Taunton

Open access · goldAbstract read
In one paragraph

Article in eLife, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 87 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Mechanism of Protein Translocation by the Sec61 Translocon Complex.Cold Spring Harbor perspectives in biology · 2023
    Review
  14. Article
  15. Biochemical and Biological Assays of Mycolactone-Mediated Inhibition of Sec61.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  16. Article
  17. Folding and Insertion of Transmembrane Helices at the ER.International journal of molecular sciences · 2021
    Review
  18. Review
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Andrew L MackinnonDepartment of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, United States.
Ville O Paavilainen
Ajay Sharma
Ramanujan S Hegde
Jack Taunton
University of California, San Francisco · USNational Institutes of Health · US

Funding

RESEARCH TRAINING IN CHEMISTRY AND CHEMICAL BIOLOGYT32GM064337 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CRAIK, CHARLES SCOTT · 2002 to 2021
$7.8M
Substrate-Selective Inhibitors of Secretory and Membrane Protein BiogenesisR01GM081644 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI TAUNTON, JACK · 2007 to 2010
$1.2M
Medical Research Council MC_UP_A022_1007NIGMS NIH HHS GM081644NIGMS NIH HHS R01 GM081644NIGMS NIH HHS T32 GM064337
6 · The paper itself

Abstract

Membrane protein biogenesis requires the coordinated movement of hydrophobic transmembrane domains (TMD) from the cytosolic vestibule of the Sec61 channel into the lipid bilayer. Molecular insight into TMD integration has been hampered by the difficulty of characterizing intermediates during this intrinsically dynamic process. In this study, we show that cotransin, a substrate-selective Sec61 inhibitor, traps nascent TMDs in the cytosolic vestibule, permitting detailed interrogation of an early pre-integration intermediate. Site-specific crosslinking revealed the pre-integrated TMD docked to Sec61 near the cytosolic tip of the lateral gate. Escape from cotransin-arrest depends not only on cotransin concentration, but also on the biophysical properties of the TMD. Genetic selection of cotransin-resistant cancer cells uncovered multiple mutations clustered near the lumenal plug of Sec61α, thus revealing cotransin's likely site of action. Our results suggest that TMD/lateral gate interactions facilitate TMD transfer into the membrane, a process that is allosterically modulated by cotransin binding to the plug. DOI: http://dx.doi.org/10.7554/eLife.01483.001.

Indexed as

AnimalsBinding SitesCell MembraneCross-Linking ReagentsDose-Response Relationship, DrugHCT116 CellsHEK293 CellsHumansMembrane ProteinsMolecular Docking SimulationMutationPeptides, CyclicProtein BindingProtein Structure, SecondaryProtein Structure, TertiaryProtein TransportcotransinCross-Linking ReagentsMembrane ProteinsPeptides, CyclicSEC61A1 protein, humanSEC61G protein, humanSEC Translocation ChannelsTumor Necrosis Factor-alphacotransinendoplasmic reticulumtransmembrane domain

Identifiers

PMID24497544
PMCPMC3913039
OpenAlexW2095763971

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.