Evidence map›Paper›PMID 24497530›Full record

ArticleBlood2014

Lineage and species-specific long noncoding RNAs during erythro-megakaryocytic development.

Vikram R Paralkar, Tejaswini Mishra, Jing Luan, Yu Yao, Andrew V Kossenkov, Stacie M Anderson, Margaret Dunagin, Maxim Pimkin, Meghneel Gore, Diana Sun and 7 more

Open access · bronzeAbstract read
In one paragraph

Article in Blood, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 120 papers.

0numbers the graph read from it
0cells of the map it votes in
120citing papers in PubMed
8.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

120 citing papers in PubMed, 183 citations in OpenAlex.

  1. Article
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  9. Review
  10. Review
  11. Article
  12. Article
  13. Oligodendrocyte-specific expression ofNon-coding RNA research · 2024
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. DelayedInternational journal of cardiology. Heart & vasculature · 2024
    Article

60 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 10 institutions in 2 countries.

Vikram R ParalkarDivision of Hematology/Oncology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA;
Tejaswini Mishra
Jing Luan
Yu Yao
Andrew V Kossenkov
Stacie M Anderson
Margaret Dunagin
Maxim Pimkin
Meghneel Gore
Diana Sun
Neeraja Konuthula
Arjun Raj
Xiuli An
Narla Mohandas
David M Bodine
Ross C Hardison
Mitchell J Weiss
Children's Hospital of Philadelphia · USUniversity of Pennsylvania · USPennsylvania State University · USIcahn School of Medicine at Mount Sinai · USLaboratoire de Biologie Physico-Chimique des Protéines Membranaires · FRNational Human Genome Research Institute · USNational Institutes of Health · USNew York Blood Center · USSalesforce (United States) · USThe Wistar Institute · US

Funding

Tumor Microenvironment and MetastasisP30CA010815 · NCI · WISTAR INSTITUTE · PI Luis J Montaner · 1985 to 2026
$75.9M
YEAST MEMBRANE CYTOSKELETONP01DK032094 · NIDDK · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI KINET, SANDRINA · 1987 to 2021
$26.7M
NHGRI/DIR Flow Cytometry CoreZICHG200350 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI ANDERSON, STACIE · 2010 to 2025
$16.3M
Hematopoietic Stem Cell BiologyZIAHG000083 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI BODINE, DAVID M. · 2009 to 2022
$12.1M
Red Cell BiologyZIAHG200339 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI BODINE, DAVID M. · 2009 to 2022
$11.8M
Research BaseP30DK090969 · NIDDK · CHILDREN'S HOSP OF PHILADELPHIA · PI CARROLL, MARTIN · 2010 to 2015
$5.7M
Global Predictions and Tests of Erythroid RegulationR01DK065806 · NIDDK · PENNSYLVANIA STATE UNIVERSITY-UNIV PARK · PI BLOBEL, GERD A, CHIAROMONTE, FRANCESCA · 2004 to 2013
$5.3M
RED CELL DEFORMABILITY IN VITRO AND SURVIVAL IN VIVOR37DK026263 · NIDDK · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI NARLA, MOHANDAS · 1995 to 2017
$4.5M
A Comprehensive Spatial Picture of Transcription in the NucleusDP2OD008514 · OD · UNIVERSITY OF PENNSYLVANIA · PI RAJ, ARJUN · 2011 to 2011
$2.4M
Enhance human ENCODE by function comparisons to mouseRC2HG005573 · NHGRI · PENNSYLVANIA STATE UNIVERSITY, THE · PI HARDISON, ROSS C · 2009 to 2011
$2.2M
Regulation of erythropoiesis by the miR-144/451 microRNA locusR01DK092318 · NIDDK · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI WEISS, MITCHELL J · 2012 to 2016
$1.8M
HEPATITIS C CLINICAL TRIAL- VIROLOGY LABORATORYN01DK092318 · NIDDK · UNIVERSITY OF WASHINGTON · PI GREYCH, DAVID · 1999 to 2000
$317k
NHGRI NIH HHS 1RC2HG005573NHGRI NIH HHS RC2 HG005573NIDDK NIH HHS DK065806NIDDK NIH HHS DK092318-01NIDDK NIH HHS N01 DK092318NIDDK NIH HHS P01 DK032094NIDDK NIH HHS P30 DK090969NIDDK NIH HHS P30DK090969NIDDK NIH HHS R01 DK065806NIDDK NIH HHS R01 DK092318NIDDK NIH HHS R56 DK065806NIH HHS DP2 OD008514Wellcome Trust
6 · The paper itself

Abstract

Mammals express thousands of long noncoding (lnc) RNAs, a few of which are known to function in tissue development. However, the entire repertoire of lncRNAs in most tissues and species is not defined. Indeed, most lncRNAs are not conserved, raising questions about function. We used RNA sequencing to identify 1109 polyadenylated lncRNAs expressed in erythroblasts, megakaryocytes, and megakaryocyte-erythroid precursors of mice, and 594 in erythroblasts of humans. More than half of these lncRNAs were unannotated, emphasizing the opportunity for new discovery through studies of specialized cell types. Analysis of the mouse erythro-megakaryocytic polyadenylated lncRNA transcriptome indicates that ~75% arise from promoters and 25% from enhancers, many of which are regulated by key transcription factors including GATA1 and TAL1. Erythroid lncRNA expression is largely conserved among 8 different mouse strains, yet only 15% of mouse lncRNAs are expressed in humans and vice versa, reflecting dramatic species-specificity. RNA interference assays of 21 abundant erythroid-specific murine lncRNAs in primary mouse erythroid precursors identified 7 whose knockdown inhibited terminal erythroid maturation. At least 6 of these 7 functional lncRNAs have no detectable expression in human erythroblasts, suggesting that lack of conservation between mammalian species does not predict lack of function.

Indexed as

AnimalsCell LineageConserved SequenceEnhancer Elements, GeneticErythroblastsErythropoiesisHumansMegakaryocyte-Erythroid Progenitor CellsMegakaryocytesMiceMice, Inbred C57BLPromoter Regions, GeneticRNA InterferenceRNA, Long NoncodingSpecies SpecificityThrombopoiesisRNA, Long NoncodingTranscription Factors

Identifiers

PMID24497530
PMCPMC3962165
OpenAlexW1993467866

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.