Evidence map›Paper›PMID 24495951›Full record

ArticleExperimental biology and medicine (Maywood, N.J.)2014

Colon cancer cell apoptosis is induced by combined exposure to the n-3 fatty acid docosahexaenoic acid and butyrate through promoter methylation.

Youngmi Cho, Nancy D Turner, Laurie A Davidson, Robert S Chapkin, Raymond J Carroll, Joanne R Lupton

Abstract read
In one paragraph

Article in Experimental biology and medicine (Maywood, N.J.), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed, 3 pooled it
7.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 3 syntheses or guidelines pooled it, 66 citations in OpenAlex.

  1. Pooled it
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  4. Trial
  5. Review
  6. Review
  7. Article
  8. Fatty acids and epigenetics in health and diseases.Food science and biotechnology · 2024
    Review
  9. Review
  10. Review
  11. Review
  12. Anticancer mechanisms of phytochemical compounds: focusing on epigenetic targets.Environmental science and pollution research international · 2021
    Review
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  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Youngmi ChoDepartment of Nutrition and Food Science, Faculty of Nutrition, Texas A&M University, College Station, TX 77843-2253, USA.
Nancy D Turner
Laurie A Davidson
Robert S Chapkin
Raymond J Carroll
Joanne R Lupton
Texas A&M University · US

Funding

Colonic Cytokinetics and Cell Signaling: Dietary EffectsR01CA059034 · NCI · TEXAS A&M UNIVERSITY SYSTEM · PI CHAPKIN, ROBERT STEPHEN · 1995 to 2012
$3.6M
Measurement Error, Nutrition and Breast/Colon CancerR37CA057030 · NCI · TEXAS A&M UNIVERSITY SYSTEM · PI CARROLL, RAYMOND J. · 2005 to 2014
$3.3M
Measurement Error, Nutrition, Physical Activity and CancerU01CA057030 · NCI · TEXAS A&M UNIVERSITY · PI CARROLL, RAYMOND J. · 2015 to 2019
$2.8M
Gene expression analysis of coding and non-coding RNAs in colon cancer preventionR01CA129444 · NCI · TEXAS A&M UNIVERSITY · PI CHAPKIN, ROBERT STEPHEN · 2007 to 2015
$2.1M
Chemoprotective effects of natural products on colonic adult stem cellsR01CA168312 · NCI · TEXAS A&M UNIVERSITY · PI CHAPKIN, ROBERT STEPHEN, PATIL, BHIMANAGOUDA S. · 2011 to 2015
$1.6M
MEASUREMENT ERROR, NUTRITION AND BREAST/COLON CANCERR01CA057030 · NCI · TEXAS A&M UNIVERSITY SYSTEM · PI CARROLL, RAYMOND J. · 1992 to 2004
$1.3M
RESPONSE TO DNA DAMAGE--COLON VS SMALL INTESTINER01CA061750 · NCI · TEXAS A&M UNIVERSITY SYSTEM · PI LUPTON, JOANNE R · 1994 to 2003
$906k
NCI NIH HHS CA057030NCI NIH HHS CA129444NCI NIH HHS CA168312NCI NIH HHS CA59034NCI NIH HHS CA61750NCI NIH HHS CA90301NCI NIH HHS R01 CA057030NCI NIH HHS R01 CA059034NCI NIH HHS R01 CA061750NCI NIH HHS R01 CA129444NCI NIH HHS R01 CA168312NCI NIH HHS R37 CA057030NCI NIH HHS U01 CA057030
6 · The paper itself

Abstract

DNA methylation and histone acetylation contribute to the transcriptional regulation of genes involved in apoptosis. We have demonstrated that docosahexaenoic acid (DHA, 22:6 n-3) and butyrate enhance colonocyte apoptosis. To determine if DHA and/or butyrate elevate apoptosis through epigenetic mechanisms thereby restoring the transcription of apoptosis-related genes, we examined global methylation; gene-specific promoter methylation of 24 apoptosis-related genes; transcription levels of Cideb, Dapk1, and Tnfrsf25; and global histone acetylation in the HCT-116 colon cancer cell line. Cells were treated with combinations of (50 µM) DHA or linoleic acid (18:2 n-6), (5 mM) butyrate or an inhibitor of DNA methyltransferases, and 5-aza-2'-deoxycytidine (5-Aza-dC, 2 µM). Among highly methylated genes, the combination of DHA and butyrate significantly reduced methylation of the proapoptotic Bcl2l11, Cideb, Dapk1, Ltbr, and Tnfrsf25 genes compared to untreated control cells. DHA treatment reduced the methylation of Cideb, Dapk1, and Tnfrsf25. These data suggest that the induction of apoptosis by DHA and butyrate is mediated, in part, through changes in the methylation state of apoptosis-related genes.

Indexed as

AcetylationAntimetabolites, AntineoplasticApoptosisApoptosis Regulatory ProteinsAzacitidineBcl-2-Like Protein 11ButyratesCell Line, TumorColonic NeoplasmsDeath-Associated Protein KinasesDecitabineDNA MethylationDNA Modification MethylasesDocosahexaenoic AcidsHCT116 CellsHistonesAntimetabolites, AntineoplasticApoptosis Regulatory ProteinsAzacitidineBCL2L11 protein, humanBcl-2-Like Protein 11ButyratesCIDEB protein, humanDAPK1 protein, humanDeath-Associated Protein KinasesDecitabineDNA Modification MethylasesDocosahexaenoic AcidsHistonesLinoleic AcidLTBR protein, humanLymphotoxin beta ReceptorMembrane ProteinsProto-Oncogene ProteinsReceptors, Tumor Necrosis Factor, Member 25TNFRSF25 protein, humanapoptosisbutyrateDNA methylationdocosahexaenoic acidepigenetics

Identifiers

PMID24495951
PMCPMC3999970
OpenAlexW2092974774

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.