Evidence map›Paper›PMID 24491541›Full record

ArticleBiochemical and biophysical research communications2014

Genome-wide analysis of murine renal distal convoluted tubular cells for the target genes of mineralocorticoid receptor.

Kohei Ueda, Katsunori Fujiki, Katsuhiko Shirahige, Celso E Gomez-Sanchez, Toshiro Fujita, Masaomi Nangaku, Miki Nagase

Open access · greenAbstract read
In one paragraph

Article in Biochemical and biophysical research communications, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 49 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. The glucocorticoid receptor potentiates aldosterone-induced transcription by the mineralocorticoid receptor.Proceedings of the National Academy of Sciences of the United States of America · 2024
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  5. Review
  6. Observational
  7. The molecular and clinical role of Tensin 1/2/3 in cancer.Journal of cellular and molecular medicine · 2023
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Sexual Dimorphism of Corticosteroid Signaling during Kidney Development.International journal of molecular sciences · 2021
    Review
  14. Article
  15. Review
  16. Article
  17. The critical role of Krüppel-like factors in kidney disease.American journal of physiology. Renal physiology · 2017
    Review
  18. Article
  19. Article
  20. Mineralocorticoid receptors are present in skeletal muscle and represent a potential therapeutic target.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Kohei UedaDepartment of Nephrology and Endocrinology, The University of Tokyo, Tokyo, Japan.
Katsunori FujikiResearch Center for Epigenetic Disease, Institute of Molecular and Cellular Biosciences, The University of Tokyo, Tokyo, Japan.
Katsuhiko ShirahigeResearch Center for Epigenetic Disease, Institute of Molecular and Cellular Biosciences, The University of Tokyo, Tokyo, Japan.
Celso E Gomez-SanchezEndocrine Section, G.V. (Sonny) Montgomery VA Medical Center, MS, USA; Endocrinology, University of Mississippi Medical Center, MS, USA.
Toshiro FujitaDivision of Clinical Epigenetics, Research Center for Advanced Science and Technology, The University of Tokyo, Tokyo, Japan.
Masaomi NangakuDepartment of Nephrology and Endocrinology, The University of Tokyo, Tokyo, Japan.
Miki NagaseDepartment of Nephrology and Endocrinology, The University of Tokyo, Tokyo, Japan; Department of Anatomy and Life Structure, School of Medicine Juntendo University, Tokyo, Japan. Electronic address: mnagase-tky@umin.ac.jp.
The University of Tokyo · JPG.V. (Sonny) Montgomery VA Medical Center · USJuntendo University · JP

Funding

ROLE OF MINERALOCORTICOIDS IN LOW-RENIN HYPERTENSIONR01HL027255 · NHLBI · UNIVERSITY OF SOUTH FLORIDA · PI GOMEZ-SANCHEZ, CELSO ENRIQUE · 1985 to 2017
$3.9M
NHLBI NIH HHS R01 HL027255
6 · The paper itself

Abstract

BACKGROUND AND

objectiveMineralocorticoid receptor (MR) is a member of nuclear receptor family proteins and contributes to fluid homeostasis in the kidney. Although aldosterone-MR pathway induces several gene expressions in the kidney, it is often unclear whether the gene expressions are accompanied by direct regulations of MR through its binding to the regulatory region of each gene. The purpose of this study is to identify the direct target genes of MR in a murine distal convoluted tubular epithelial cell-line (mDCT).

methodsWe analyzed the DNA samples of mDCT cells overexpressing 3xFLAG-hMR after treatment with 10(-7)M aldosterone for 1h by chromatin immunoprecipitation with deep-sequence (ChIP-seq) and mRNA of the cell-line with treatment of 10(-7)M aldosterone for 3h by microarray.

results3xFLAG-hMR overexpressed in mDCT cells accumulated in the nucleus in response to 10(-9)M aldosterone. Twenty-five genes were indicated as the candidate target genes of MR by ChIP-seq and microarray analyses. Five genes, Sgk1, Fkbp5, Rasl12, Tns1 and Tsc22d3 (Gilz), were validated as the direct target genes of MR by quantitative RT-qPCR and ChIP-qPCR. MR binding regions adjacent to Ctgf and Serpine1 were also validated.

conclusionsWe, for the first time, captured the genome-wide distribution of MR in mDCT cells and, furthermore, identified five MR target genes in the cell-line. These results will contribute to further studies on the mechanisms of kidney diseases.

Indexed as

AldosteroneAnimalsCell LineChromatin ImmunoprecipitationGene Expression ProfilingGenomeHEK293 CellsHigh-Throughput Nucleotide SequencingHumansImmediate-Early ProteinsKidney Tubules, DistalMiceMice, Inbred C57BLMicrofilament ProteinsMonomeric GTP-Binding ProteinsOligonucleotide Array Sequence AnalysisAldosteroneDsip1 protein, mouseImmediate-Early ProteinsMicrofilament ProteinsMonomeric GTP-Binding ProteinsProtein Serine-Threonine KinasesRASL12 protein, mouseReceptors, MineralocorticoidSerum-Glucocorticoid Regulated KinasesTacrolimus Binding Protein 5Tacrolimus Binding ProteinsTensinsTNS1 protein, humanTns1 protein, mouseTranscription FactorsAldosteroneChIP-seqDistal convoluted tubulesMineralocorticoid receptor

Identifiers

PMID24491541
PMCPMC5488251
OpenAlexW2031506581

What OpenQuestion holds

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LicenceTDM
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.