Evidence map›Paper›PMID 24491145›Full record

ArticleACS chemical biology2014

De novo design of self-assembling foldamers that inhibit heparin-protein interactions.

Geronda L Montalvo, Yao Zhang, Trevor M Young, Michael J Costanzo, Katie B Freeman, Jun Wang, Dylan J Clements, Emma Magavern, Robert W Kavash, Richard W Scott and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in ACS chemical biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
  2. ACS omega · 2023
    Article
  3. Article
  4. Review
  5. Dynamic Combinatorial Optimization ofJournal of medicinal chemistry · 2022
    Article
  6. Article
  7. Article
  8. Targeting heparin and heparan sulfate protein interactions.Organic & biomolecular chemistry · 2017
    Review
  9. Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Geronda L MontalvoDepartment of Biochemistry & Biophysics and ‡Department of Chemistry, University of Pennsylvania , Philadelphia, Pennsylvania 19104, United States.
Yao Zhang
Trevor M Young
Michael J Costanzo
Katie B Freeman
Jun Wang
Dylan J Clements
Emma Magavern
Robert W Kavash
Richard W Scott
Dahui Liu
William F Degrado
Poly Med (United States) · USUniversity of California, San Francisco · US

Funding

De novo design of alpha-helical bundlesR37GM054616 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI DEGRADO, WILLIAM · 2004 to 2013
$3.6M
DE NOVO DESIGN OF ALPHA HELICAL BUNDLESR01GM054616 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI DEGRADO, WILLIAM · 1996 to 2016
$2.4M
Development of biomimetic oligomers as anticoagulant antagonistsR44HL090113 · NHLBI · POLYMEDIX, INC, · PI SCOTT, RICHARD W · 2009 to 2010
$923k
NHLBI NIH HHS 5R44HL090113NHLBI NIH HHS R44 HL090113NIGMS NIH HHS GM54616NIGMS NIH HHS R01 GM054616NIGMS NIH HHS R37 GM054616
6 · The paper itself

Abstract

A series of self-associating foldamers have been designed as heparin reversal agents, as antidotes to prevent bleeding due to this potent antithrombotic agent. The foldamers have a repeating sequence of Lys-Sal, in which Sal is 5-amino-2-methoxy-benzoic acid. These foldamers are designed to self-associate along one face of an extended chain in a β-sheet-like interaction. The methoxy groups were included to form intramolecular hydrogen bonds that preclude the formation of very large amyloid-like aggregates, while the positively charged Lys side chains were introduced to interact electrostatically with the highly anionic heparin polymer. The prototype compound (Lys-Sal)4 carboxamide weakly associates in aqueous solution at physiological salt concentration in a monomer-dimer-hexamer equilibrium. The association is greatly enhanced at either high ionic strength or in the presence of a heparin derivative, which is bound tightly. Variants of this foldamer are active in an antithrombin III-factor Xa assay, showing their potential as heparin reversal agents.

Indexed as

Drug DesignModels, BiologicalCircular DichroismDose-Response Relationship, DrugFibrinolytic AgentsHeparinInhibitory Concentration 50Molecular StructureProtein BindingProtein ConformationFibrinolytic AgentsHeparin

Identifiers

PMID24491145
PMCPMC4324449
OpenAlexW2320857255

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.