ArticlePloS one2014
Citrus sinensis annotation project (CAP): a comprehensive database for sweet orange genome.
Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.
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Who cites it
30 citing papers in PubMed.
- Emanating candidate genes responsible for fruit quality traits in citrus through GBS-based genome wide association studies.BMC genomics · 2025Article
- HOFE: an interactive forensic entomological database.Database : the journal of biological databases and curation · 2024Article
- Genome-Wide Identification and Characterization of the Sweet Orange (International journal of molecular sciences · 2024Article
- Pulsed electric field technology as a promising pre-treatment for enhancing orange agro-industrial waste biorefinery.RSC advances · 2024Review
- Genome-wide identification of GH9 gene family and the assessment of its role during fruit abscission zone formation in Vaccinium ashei.Plant cell reports · 2023Article
- CsBZIP40 confers resistance against citrus bacterial canker by repressing CsWRKY43-CsPrx53/CsSOD13 cascade mediated ROS scavenging.Horticulture research · 2023Article
- Comparative transcriptome analysis ofFrontiers in plant science · 2022Article
- Comprehensive analysis of the GALACTINOL SYNTHASE (GolS) gene family in citrus and the function of CsGolS6 in stress tolerance.PloS one · 2022Article
- GreeningDB: A Database of Host-Pathogen Protein-Protein Interactions and Annotation Features of the Bacteria Causing Huanglongbing HLB Disease.International journal of molecular sciences · 2021Article
- Systematic Analysis and Functional Validation of Citrus Pectin Acetylesterases (CsPAEs) Reveals that CsPAE2 Negatively Regulates Citrus Bacterial Canker Development.International journal of molecular sciences · 2020Article
- Origin and evolution of a gibberellin-deactivating enzyme GAMT.Plant direct · 2020Article
- CsPrx25, a class III peroxidase in Citrus sinensis, confers resistance to citrus bacterial canker through the maintenance of ROS homeostasis and cell wall lignification.Horticulture research · 2020Article
- Genomewide analysis of the CIII peroxidase family in sweet orange (Journal of genetics · 2020Article
- CitGVD: a comprehensive database of citrus genomic variations.Horticulture research · 2020Article
- CsWAKL08, a pathogen-induced wall-associated receptor-like kinase in sweet orange, confers resistance to citrus bacterial canker via ROS control and JA signaling.Horticulture research · 2020Article
- CitrusKB: a comprehensive knowledge base for transcriptome and interactome of Citrus spp. infected by Xanthomonas citri subsp. citri at different infection stages.Database : the journal of biological databases and curation · 2020Article
- Article
- Citrus carotenoid isomerase gene characterization by complementation of the "Micro-Tom" tangerine mutant.Plant cell reports · 2019Article
- Systematic Analysis and Functional Validation of Citrus XTH Genes Reveal the Role of Csxth04 in Citrus Bacterial Canker Resistance and Tolerance.Frontiers in plant science · 2019Article
- Article
Corrections and comments
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Authors and funding
10 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Citrus is one of the most important and widely grown fruit crop with global production ranking firstly among all the fruit crops in the world. Sweet orange accounts for more than half of the Citrus production both in fresh fruit and processed juice. We have sequenced the draft genome of a double-haploid sweet orange (C. sinensis cv. Valencia), and constructed the Citrus sinensis annotation project (CAP) to store and visualize the sequenced genomic and transcriptome data. CAP provides GBrowse-based organization of sweet orange genomic data, which integrates ab initio gene prediction, EST, RNA-seq and RNA-paired end tag (RNA-PET) evidence-based gene annotation. Furthermore, we provide a user-friendly web interface to show the predicted protein-protein interactions (PPIs) and metabolic pathways in sweet orange. CAP provides comprehensive information beneficial to the researchers of sweet orange and other woody plants, which is freely available at http://citrus.hzau.edu.cn/.
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