ArticlePloS one2014
Analysis of global gene expression in Brachypodium distachyon reveals extensive network plasticity in response to abiotic stress.
Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.
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Who cites it
44 citing papers in PubMed.
- Selection on genome-wide gene expression plasticity of rice in wet and dry field environments.Molecular ecology · 2025Article
- Genome-Wide Identification of SRS Gene Family in Wheat and Expression Analysis Under Abiotic Stress.International journal of molecular sciences · 2025Article
- Unraveling the occurrence of hyperhydricity in oil palm somatic embryos during somatic embryogenesis process.Protoplasma · 2025Article
- Bio Prospecting of Endophytes and PGPRs in Artemisinin Production for the Socio-economic Advancement.Current microbiology · 2023Review
- Parallel adaptation to lower altitudes is associated with enhanced plasticity in Heliosperma pusillum (Caryophyllaceae).The Plant journal : for cell and molecular biology · 2023Article
- Testing the chilling- before drought-tolerance hypothesis in Pooideae grasses.Molecular ecology · 2023Article
- A stress-inducible protein regulates drought tolerance and flowering time in Brachypodium and Arabidopsis.Plant physiology · 2023Article
- Transcriptomic and co-expression network analyses on diverse wheat landraces identifies candidate master regulators of the response to early drought.Frontiers in plant science · 2023Article
- Patterns of pan-genome occupancy and gene coexpression under water-deficit in Brachypodium distachyon.Molecular ecology · 2022Article
- Targeted and Untargeted Metabolomic Analyses Reveal Organ Specificity of Specialized Metabolites in the Model GrassMolecules (Basel, Switzerland) · 2022Article
- Comparative time-course transcriptome analysis of two contrasting alfalfa (Frontiers in plant science · 2022Article
- Photosynthetic Carbon Fixation and Sucrose Metabolism Supplemented by Weighted Gene Co-expression Network Analysis in Response to Water Stress in Rice With Overlapping Growth Stages.Frontiers in plant science · 2022Article
- A Proteome-Level Investigation IntoFrontiers in plant science · 2022Article
- Allotetraploidization inCells · 2021Article
- Transcriptional memories mediate the plasticity of cold stress responses to enable morphological acclimation in Brachypodium distachyon.The New phytologist · 2021Article
- Genetic and Methylome Variation in TurkishInternational journal of molecular sciences · 2020Article
- Physiological and transcriptome analysis of Poa pratensis var. anceps cv. Qinghai in response to cold stress.BMC plant biology · 2020Article
- Dynamics of Global Gene Expression and Regulatory Elements in Growing Brachypodium Root System.Scientific reports · 2020Article
- The Role ofFrontiers in plant science · 2020Review
- Depicting the Core Transcriptome Modulating Multiple Abiotic Stresses Responses in Sesame (International journal of molecular sciences · 2019Article
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Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Brachypodium distachyon is a close relative of many important cereal crops. Abiotic stress tolerance has a significant impact on productivity of agriculturally important food and feedstock crops. Analysis of the transcriptome of Brachypodium after chilling, high-salinity, drought, and heat stresses revealed diverse differential expression of many transcripts. Weighted Gene Co-Expression Network Analysis revealed 22 distinct gene modules with specific profiles of expression under each stress. Promoter analysis implicated short DNA sequences directly upstream of module members in the regulation of 21 of 22 modules. Functional analysis of module members revealed enrichment in functional terms for 10 of 22 network modules. Analysis of condition-specific correlations between differentially expressed gene pairs revealed extensive plasticity in the expression relationships of gene pairs. Photosynthesis, cell cycle, and cell wall expression modules were down-regulated by all abiotic stresses. Modules which were up-regulated by each abiotic stress fell into diverse and unique gene ontology GO categories. This study provides genomics resources and improves our understanding of abiotic stress responses of Brachypodium.
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