ArticlePloS one2014
Genomic evolution of 11 type strains within family Planctomycetaceae.
Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.
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Who cites it
11 citing papers in PubMed, 28 citations in OpenAlex.
- An update on novel taxa and revised taxonomic status of bacteria isolated from aquatic host species described in 2022-2023.Journal of clinical microbiology · 2024Review
- Structure and Function Analysis of CultivatedBiology · 2023Article
- Ruminal bacterial communities differ in early-lactation dairy cows with differing risk of ruminal acidosis.Frontiers in microbiomes · 2023Article
- Self-Crossing Leads to Weak Co-Variation of the Bacterial and Fungal Communities in the Rice Rhizosphere.Microorganisms · 2021Article
- Maioricimonas rarisocia gen. nov., sp. nov., a novel planctomycete isolated from marine sediments close to Mallorca Island.Antonie van Leeuwenhoek · 2020Article
- Niche-directed evolution modulates genome architecture in freshwater Planctomycetes.The ISME journal · 2019Article
- Comparative Genomics of Four Isosphaeraceae Planctomycetes: A Common Pool of Plasmids and Glycoside Hydrolase Genes Shared byFrontiers in microbiology · 2017Article
- Biochemical Characterization of a Family 15 Carbohydrate Esterase from a Bacterial Marine Arctic Metagenome.PloS one · 2016Article
- Planctomycetes do possess a peptidoglycan cell wall.Nature communications · 2015Article
- Anammox Planctomycetes have a peptidoglycan cell wall.Nature communications · 2015Article
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Corrections and comments
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Authors and funding
16 authors at 4 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The species in family Planctomycetaceae are ideal groups for investigating the origin of eukaryotes. Their cells are divided by a lipidic intracytoplasmic membrane and they share a number of eukaryote-like molecular characteristics. However, their genomic structures, potential abilities, and evolutionary status are still unknown. In this study, we searched for common protein families and a core genome/pan genome based on 11 sequenced species in family Planctomycetaceae. Then, we constructed phylogenetic tree based on their 832 common protein families. We also annotated the 11 genomes using the Clusters of Orthologous Groups database. Moreover, we predicted and reconstructed their core/pan metabolic pathways using the KEGG (Kyoto Encyclopedia of Genes and Genomes) orthology system. Subsequently, we identified genomic islands (GIs) and structural variations (SVs) among the five complete genomes and we specifically investigated the integration of two Planctomycetaceae plasmids in all 11 genomes. The results indicate that Planctomycetaceae species share diverse genomic variations and unique genomic characteristics, as well as have huge potential for human applications.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.