Evidence map›Paper›PMID 24489768›Full record

ArticlePloS one2014

Probing oral microbial functionality--expression of spxB in plaque samples.

Lin Zhu, Yifan Xu, Joseph J Ferretti, Jens Kreth

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.6field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 22 citations in OpenAlex.

  1. HApplied and environmental microbiology · 2026
    Article
  2. Article
  3. Article
  4. Probiotics During the Therapeutic Management of Periodontitis.Advances in experimental medicine and biology · 2022
    Review
  5. Article
  6. Quantification and gene expression ofThe Saudi dental journal · 2021
    Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. [The origin of hydrogen peroxide in oral cavity and its role in oral microecology balance].Hua xi kou qiang yi xue za zhi = Huaxi kouqiang yixue zazhi = West China journal of stomatology · 2017
    Article
  16. Article
  17. Article
  18. Article
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Lin ZhuDepartment of Periodontics, College of Dentistry, University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma, United States of America.
Yifan XuDepartment of Microbiology and Immunology, College of Medicine, University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma, United States of America ; Department of Surgical Oncology, The First Hospital of China Medical University, Shenyang, People's Republic of China.
Joseph J FerrettiDepartment of Microbiology and Immunology, College of Medicine, University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma, United States of America.
Jens KrethDepartment of Microbiology and Immunology, College of Medicine, University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma, United States of America ; Department of Oral Biology, College of Dentistry, University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma, United States of America.
University of Oklahoma Health Sciences Center · USChina Medical University · CN

Funding

Pyruvate oxidase determines ecological fitness of oral streptococciR01DE021726 · NIDCR · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI KRETH, JENS · 2014 to 2018
$1.9M
Ser/Thr protein kinase PknB as target to decrease Streptococcus mutans ecologicalR03DE022601 · NIDCR · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI KRETH, JENS · 2012 to 2013
$218k
NIDCR NIH HHS DE022601NIDCR NIH HHS R01 DE021726NIDCR NIH HHS R03 DE022601
6 · The paper itself

Abstract

The Human Oral Microbiome Database (HOMD) provides an extensive collection of genome sequences from oral bacteria. The sequence information is a static snapshot of the microbial potential of the so far sequenced species. A major challenge is to connect the microbial potential encoded in the metagenome to an actual function in the in vivo oral biofilm. In the present study we took a reductionist approach and identified a considerably conserved metabolic gene, spxB to be encoded by a majority of oral streptococci using the HOMD metagenome information. spxB encodes the pyruvate oxidase responsible for the production of growth inhibiting amounts of hydrogen peroxide (H2O2) and has previously been shown as important in the interspecies competition in the oral biofilm. Here we demonstrate a strong correlation of H2O2 production and the presence of the spxB gene in dental plaque. Using Real-Time RT PCR we show that spxB is expressed in freshly isolated human plaque samples from several donors and that the expression is relative constant when followed over time in one individual. This is the first demonstration of an oral community encoded gene expressed in vivo suggesting a functional role of spxB in oral biofilm physiology. This also demonstrates a possible strategy to connect the microbial potential of the metagenome to its functionality in future studies by identifying similar highly conserved genes in the oral microbial community.

Indexed as

Gene Expression Regulation, BacterialAmino Acid SequenceBacterial ProteinsBiofilmsConserved SequenceDatabases, FactualDental PlaqueHumansHydrogen PeroxideMicrobiotaMolecular Sequence DataPyruvate OxidaseReal-Time Polymerase Chain ReactionStreptococcusBacterial ProteinsHydrogen PeroxidePyruvate Oxidase

Identifiers

PMID24489768
PMCPMC3906080
OpenAlexW2031791602

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.