Evidence map›Paper›PMID 24489640›Full record

ArticlePloS one2014

Multidimensional single-cell analysis of BCR signaling reveals proximal activation defect as a hallmark of chronic lymphocytic leukemia B cells.

M Lia Palomba, Kelly Piersanti, Carly G K Ziegler, Hugo Decker, Jesse W Cotari, Kurt Bantilan, Ivelise Rijo, Jeff R Gardner, Mark Heaney, Debra Bemis and 6 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

  1. Serum Interleukin 6 (IL -6) as Prognostic Marker in Egyptian CLL patients.International journal of hematology-oncology and stem cell research · 2024
    Article
  2. Article
  3. Article
  4. Expression ofHaematologica · 2018
    Article
  5. Article
  6. Article
  7. Molecular basis of chronic lymphocytic leukemia diagnosis and prognosis.Cellular oncology (Dordrecht, Netherlands) · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 1 country.

M Lia PalombaDivision of Hematology, Memorial Sloan-Kettering Cancer Center, New York, New York, United States of America ; Center Cancer Systems Biology, Memorial Sloan-Kettering Cancer Center, New York, New York, United States of America.
Kelly PiersantiDivision of Hematology, Memorial Sloan-Kettering Cancer Center, New York, New York, United States of America ; Center Cancer Systems Biology, Memorial Sloan-Kettering Cancer Center, New York, New York, United States of America.
Carly G K ZieglerCenter Cancer Systems Biology, Memorial Sloan-Kettering Cancer Center, New York, New York, United States of America ; Program in Computational Biology, Memorial Sloan-Kettering Cancer Center, New York, New York, United States of America.
Hugo DeckerCenter Cancer Systems Biology, Memorial Sloan-Kettering Cancer Center, New York, New York, United States of America ; Program in Computational Biology, Memorial Sloan-Kettering Cancer Center, New York, New York, United States of America.
Jesse W CotariCenter Cancer Systems Biology, Memorial Sloan-Kettering Cancer Center, New York, New York, United States of America ; Program in Computational Biology, Memorial Sloan-Kettering Cancer Center, New York, New York, United States of America.
Kurt BantilanDivision of Hematology, Memorial Sloan-Kettering Cancer Center, New York, New York, United States of America.
Ivelise RijoDivision of Hematology, Memorial Sloan-Kettering Cancer Center, New York, New York, United States of America.
Jeff R GardnerDivision of Hematology, Memorial Sloan-Kettering Cancer Center, New York, New York, United States of America.
Mark HeaneyDivision of Hematology, Memorial Sloan-Kettering Cancer Center, New York, New York, United States of America.
Debra BemisCenter Cancer Systems Biology, Memorial Sloan-Kettering Cancer Center, New York, New York, United States of America ; Program in Computational Biology, Memorial Sloan-Kettering Cancer Center, New York, New York, United States of America.
Robert BalderasBD Biosciences, San Diego, California, United States of America.
Sami N MalekDivision of Hematology/Oncology, University of Michigan Health System, Ann Harbor, Michigan, United States of America.
Erlene SeymourDivision of Hematology/Oncology, University of Michigan Health System, Ann Harbor, Michigan, United States of America.
Andrew D ZelenetzDivision of Hematology, Memorial Sloan-Kettering Cancer Center, New York, New York, United States of America.
Marcel R M van den BrinkDivision of Hematology, Memorial Sloan-Kettering Cancer Center, New York, New York, United States of America.
Grégoire Altan-BonnetCenter Cancer Systems Biology, Memorial Sloan-Kettering Cancer Center, New York, New York, United States of America ; Program in Computational Biology, Memorial Sloan-Kettering Cancer Center, New York, New York, United States of America.
Memorial Sloan Kettering Cancer Center · USBD Biosciences (United States) · USMichigan Medicine · USMichigan United · US

Funding

Variability of Cellular Responses to Growth Factors and Drugs During TumorgenesisU54CA148967 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI ALTAN-BONNET, GREGOIRE · 2010 to 2014
$13.8M
Strategies to enhance immune reconstitution after bone marrow transplantR01HL069929 · NHLBI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI VAN DEN BRINK, MARCEL R M · 2002 to 2015
$7.0M
IMMUNOLOGY RESEARCH TRAINING PROGRAMT32AI007621 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI CESARMAN, ETHEL · 1999 to 2014
$3.4M
Strategies to Enhance Lymphoid Recovery After Radiation-Induced InjuryR01AI080455 · NIAID · SLOAN-KETTERING INST CAN RESEARCH · PI VAN DEN BRINK, MARCEL R M · 2008 to 2012
$2.6M
Quantitative modeling of the phenotypic variability of individual T cells and theR01AI083408 · NIAID · SLOAN-KETTERING INST CAN RESEARCH · PI ALTAN-BONNET, GREGOIRE · 2009 to 2012
$1.9M
T cell homing in intestinal graft-versus-host diseaseR01CA107096 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI VAN DEN BRINK, MARCEL R M · 2005 to 2009
$1.6M
CD20 DNA VACCINATION FOR B-CELL LYMPHOMAK08CA118260 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI PALOMBA, MARIA LIA · 2006 to 2010
$673k
Self-organization of T lymphocyte activation into collective immune responsesR56AI083408 · NIAID · SLOAN-KETTERING INST CAN RESEARCH · PI HUSE, MORGAN A · 2014 to 2014
$537k
NCI NIH HHS K08 CA118260NCI NIH HHS R01 CA107096NCI NIH HHS R01-CA107096NCI NIH HHS U54 CA148967NHLBI NIH HHS R01 HL069929NHLBI NIH HHS R01-HL069929NIAID NIH HHS R01 AI080455NIAID NIH HHS R01-AI080455NIAID NIH HHS R01 AI083408NIAID NIH HHS R56 AI083408NIAID NIH HHS T32 AI007621
6 · The paper itself

Abstract

purposeChronic Lymphocytic Leukemia (CLL) is defined by a perturbed B-cell receptor-mediated signaling machinery. We aimed to model differential signaling behavior between B cells from CLL and healthy individuals to pinpoint modes of dysregulation. EXPERIMENTAL

designWe developed an experimental methodology combining immunophenotyping, multiplexed phosphospecific flow cytometry, and multifactorial statistical modeling. Utilizing patterns of signaling network covariance, we modeled BCR signaling in 67 CLL patients using Partial Least Squares Regression (PLSR). Results from multidimensional modeling were validated using an independent test cohort of 38 patients.

resultsWe identified a dynamic and variable imbalance between proximal (pSYK, pBTK) and distal (pPLCγ2, pBLNK, ppERK) phosphoresponses. PLSR identified the relationship between upstream tyrosine kinase SYK and its target, PLCγ2, as maximally predictive and sufficient to distinguish CLL from healthy samples, pointing to this juncture in the signaling pathway as a hallmark of CLL B cells. Specific BCR pathway signaling signatures that correlate with the disease and its degree of aggressiveness were identified. Heterogeneity in the PLSR response variable within the B cell population is both a characteristic mark of healthy samples and predictive of disease aggressiveness.

conclusionSingle-cell multidimensional analysis of BCR signaling permitted focused analysis of the variability and heterogeneity of signaling behavior from patient-to-patient, and from cell-to-cell. Disruption of the pSYK/pPLCγ2 relationship is uncovered as a robust hallmark of CLL B cell signaling behavior. Together, these observations implicate novel elements of the BCR signal transduction as potential therapeutic targets.

Indexed as

Gene Expression Regulation, LeukemicModels, StatisticalSignal TransductionAntibodies, Anti-IdiotypicB-LymphocytesFlow CytometryHumansImmunophenotypingIntracellular Signaling Peptides and ProteinsLeast-Squares AnalysisLeukemia, Lymphocytic, Chronic, B-CellLymphocyte ActivationPhospholipase C gammaPhosphorylationProtein-Tyrosine KinasesReceptors, Antigen, B-CellAntibodies, Anti-Idiotypicanti-IgMIntracellular Signaling Peptides and ProteinsPhospholipase C gammaProtein-Tyrosine KinasesReceptors, Antigen, B-CellSyk KinaseSYK protein, human

Identifiers

PMID24489640
PMCPMC3906024
OpenAlexW2058586520

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.