Evidence map›Paper›PMID 24489114›Full record

ArticleMolecular biology and evolution2014

The relation between recombination rate and patterns of molecular evolution and variation in Drosophila melanogaster.

José L Campos, Daniel L Halligan, Penelope R Haddrill, Brian Charlesworth

Open access · greenAbstract read
In one paragraph

Article in Molecular biology and evolution, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 85 papers.

0numbers the graph read from it
0cells of the map it votes in
85citing papers in PubMed
17.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

85 citing papers in PubMed, 162 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Reconciling theories of dominance with the relative rates of adaptive substitution on sex chromosomes and autosomes.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  10. Article
  11. Article
  12. Genomic Insights into High-Altitude Adaptation: A Comparative Analysis ofInternational journal of molecular sciences · 2024
    Article
  13. Article
  14. Quantifying the fraction of new mutations that are recessive lethal.Evolution; international journal of organic evolution · 2023
    Article
  15. Article
  16. Article
  17. How Can We Resolve Lewontin's Paradox?Genome biology and evolution · 2022
    Article
  18. Recombination landscape dimorphism and sex chromosome evolution in the dioecious plantPhilosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022
    Article
  19. Article
  20. Article

25 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

José L CamposInstitute of Evolutionary Biology, School of Biological Sciences, University of Edinburgh, Edinburgh, United Kingdom.
Daniel L Halligan
Penelope R Haddrill
Brian Charlesworth
University of Edinburgh · GBInternational Union of Pure and Applied Chemistry · US

Funding

Biotechnology and Biological Sciences Research Council BB/H006028/1Wellcome TrustWellcome Trust 088114
6 · The paper itself

Abstract

Genetic recombination associated with sexual reproduction increases the efficiency of natural selection by reducing the strength of Hill-Robertson interference. Such interference can be caused either by selective sweeps of positively selected alleles or by background selection (BGS) against deleterious mutations. Its consequences can be studied by comparing patterns of molecular evolution and variation in genomic regions with different rates of crossing over. We carried out a comprehensive study of the benefits of recombination in Drosophila melanogaster, both by contrasting five independent genomic regions that lack crossing over with the rest of the genome and by comparing regions with different rates of crossing over, using data on DNA sequence polymorphisms from an African population that is geographically close to the putatively ancestral population for the species, and on sequence divergence from a related species. We observed reductions in sequence diversity in noncrossover (NC) regions that are inconsistent with the effects of hard selective sweeps in the absence of recombination. Overall, the observed patterns suggest that the recombination rate experienced by a gene is positively related to an increase in the efficiency of both positive and purifying selection. The results are consistent with a BGS model with interference among selected sites in NC regions, and joint effects of BGS, selective sweeps, and a past population expansion on variability in regions of the genome that experience crossing over. In such crossover regions, the X chromosome exhibits a higher rate of adaptive protein sequence evolution than the autosomes, implying a Faster-X effect.

Indexed as

Evolution, MolecularRecombination, GeneticAnimalsChromosomes, InsectCrossing Over, GeneticDrosophila melanogasterFemaleGenome, InsectHeterochromatinMaleModels, GeneticPolymorphism, Single NucleotideSelection, GeneticX ChromosomeHeterochromatinbackground selectioncrossing overDrosophila melanogasterheterochromatinHill–Robertson interferencerecombinationselective sweeps

Identifiers

PMID24489114
PMCPMC3969569
OpenAlexW2061661545

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.