Evidence map›Paper›PMID 24488310›Full record

ArticleJournal of bacteriology2014

RNase E affects the expression of the acyl-homoserine lactone synthase gene sinI in Sinorhizobium meliloti.

Kathrin Baumgardt, Pornsri Charoenpanich, Matthew McIntosh, Adam Schikora, Elke Stein, Sebastian Thalmann, Karl-Heinz Kogel, Gabriele Klug, Anke Becker, Elena Evguenieva-Hackenberg

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In one paragraph

Article in Journal of bacteriology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
6.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 35 citations in OpenAlex.

  1. mBio · 2025
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  8. Quorum Quenching Activity of the PGPRFrontiers in microbiology · 2020
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  10. Transcriptome Analysis ofInternational journal of molecular sciences · 2018
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  12. Frontiers in genetics · 2018
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  14. Article
  15. Article
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  17. Editorial: Salicylic Acid Signaling Networks.Frontiers in plant science · 2016
    Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Kathrin BaumgardtInstitute of Microbiology and Molecular Biology, University of Gießen, Gießen, Germany.
Pornsri Charoenpanich
Matthew McIntosh
Adam Schikora
Elke Stein
Sebastian Thalmann
Karl-Heinz Kogel
Gabriele Klug
Anke Becker
Elena Evguenieva-Hackenberg
University of Giessen · DELoewe Center for Synthetic Microbiology · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Quorum sensing of Sinorhizobium meliloti relies on N-acyl-homoserine lactones (AHLs) as autoinducers. AHL production increases at high population density, and this depends on the AHL synthase SinI and two transcriptional regulators, SinR and ExpR. Our study demonstrates that ectopic expression of the gene rne, coding for RNase E, an endoribonuclease that is probably essential for growth, prevents the accumulation of AHLs at detectable levels. The ectopic rne expression led to a higher level of rne mRNA and a lower level of sinI mRNA independently of the presence of ExpR, the AHL receptor, and AHLs. In line with this, IPTG (isopropyl-β-D-thiogalactopyranoside)-induced overexpression of rne resulted in a shorter half-life of sinI mRNA and a strong reduction of AHL accumulation. Moreover, using translational sinI-egfp fusions, we found that sinI expression is specifically decreased upon induced overexpression of rne, independently of the presence of the global posttranscriptional regulator Hfq. The 28-nucleotide 5' untranslated region (UTR) of sinI mRNA was sufficient for this effect. Random amplification of 5' cDNA ends (5'-RACE) analyses revealed a potential RNase E cleavage site at position +24 between the Shine-Dalgarno site and the translation start site. We postulate therefore that RNase E-dependent degradation of sinI mRNA from the 5' end is one of the steps mediating a high turnover of sinI mRNA, which allows the Sin quorum-sensing system to respond rapidly to changes in transcriptional control of AHL production.

Indexed as

Gene Expression Regulation, EnzymologicAcyl-ButyrolactonesBacterial ProteinsEndoribonucleasesGene Expression Regulation, BacterialLigasesSinorhizobium melilotiAcyl-ButyrolactonesBacterial ProteinsEndoribonucleasesLigasesN-acylhomoserine lactone synthaseribonuclease E

Identifiers

PMID24488310
PMCPMC3993346
OpenAlexW2148118616

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.