Evidence map›Paper›PMID 24487692›Full record

ArticleNature chemical biology2014

Bacteriophages use an expanded genetic code on evolutionary paths to higher fitness.

Michael J Hammerling, Jared W Ellefson, Daniel R Boutz, Edward M Marcotte, Andrew D Ellington, Jeffrey E Barrick

Abstract read
In one paragraph

Article in Nature chemical biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Review
  5. ACS synthetic biology · 2020
    Review
  6. Article
  7. Review
  8. Xenoprotein engineering via synthetic libraries.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  9. Playing with the Molecules of Life.ACS chemical biology · 2018
    Review
  10. Article
  11. Article
  12. Review
  13. Rewriting the Genetic Code.Annual review of microbiology · 2017
    Review
  14. Review
  15. Future of the Genetic Code.Life (Basel, Switzerland) · 2017
    Review
  16. Review
  17. Review
  18. Article
  19. Article
  20. Overcoming Challenges in Engineering the Genetic Code.Journal of molecular biology · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Michael J HammerlingCenter for Systems and Synthetic Biology, Institute for Cellular and Molecular Biology, Department of Molecular Biosciences, The University of Texas at Austin, Austin, Texas, USA.
Jared W EllefsonCenter for Systems and Synthetic Biology, Institute for Cellular and Molecular Biology, Department of Molecular Biosciences, The University of Texas at Austin, Austin, Texas, USA.
Daniel R BoutzCenter for Systems and Synthetic Biology, Institute for Cellular and Molecular Biology, Department of Molecular Biosciences, The University of Texas at Austin, Austin, Texas, USA.
Edward M MarcotteCenter for Systems and Synthetic Biology, Institute for Cellular and Molecular Biology, Department of Molecular Biosciences, The University of Texas at Austin, Austin, Texas, USA.
Andrew D EllingtonCenter for Systems and Synthetic Biology, Institute for Cellular and Molecular Biology, Department of Molecular Biosciences, The University of Texas at Austin, Austin, Texas, USA.
Jeffrey E BarrickCenter for Systems and Synthetic Biology, Institute for Cellular and Molecular Biology, Department of Molecular Biosciences, The University of Texas at Austin, Austin, Texas, USA.

Funding

Next-Generation Proteomics: Massively Parallel Single-Molecule Protein IdentificaDP1GM106408 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI MARCOTTE, EDWARD M · 2012 to 2016
$3.8M
Proteomics of widespread, reversible protein assemblies in aging and aggregationR01GM076536 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI MARCOTTE, EDWARD M · 2006 to 2014
$2.9M
Identifying Mutations that Promote Microbial EvolvabilityR00GM087550 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI BARRICK, JEFFREY EVAN · 2011 to 2013
$724k
NIGMS NIH HHS DP1 GM106408NIGMS NIH HHS R00 GM087550NIGMS NIH HHS R00-GM087550NIGMS NIH HHS R01 GM076536
6 · The paper itself

Abstract

Bioengineering advances have made it possible to fundamentally alter the genetic codes of organisms. However, the evolutionary consequences of expanding an organism's genetic code with a noncanonical amino acid are poorly understood. Here we show that bacteriophages evolved on a host that incorporates 3-iodotyrosine at the amber stop codon acquire neutral and beneficial mutations to this new amino acid in their proteins, demonstrating that an expanded genetic code increases evolvability.

Indexed as

Evolution, MolecularAmino AcidsBacteriophagesCodon, TerminatorMonoiodotyrosine3-iodotyrosineAmino AcidsCodon, TerminatorMonoiodotyrosine

Identifiers

PMID24487692
PMCPMC3932624

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.