Evidence map›Paper›PMID 24486019›Full record

ArticleMolecular cell2014

Optimal translational termination requires C4 lysyl hydroxylation of eRF1.

Tianshu Feng, Atsushi Yamamoto, Sarah E Wilkins, Elizaveta Sokolova, Luke A Yates, Martin Münzel, Pooja Singh, Richard J Hopkinson, Roman Fischer, Matthew E Cockman and 12 more

Abstract read
In one paragraph

Article in Molecular cell, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 74 papers.

0numbers the graph read from it
0cells of the map it votes in
74citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

74 citing papers in PubMed.

  1. Distinct responses ofMolecular therapy. Nucleic acids · 2026
    Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Review
  7. Substrate selectivity and inhibition of the human lysyl hydroxylase JMJD7.Protein science : a publication of the Protein Society · 2024
    Article
  8. Versatile JMJD proteins: juggling histones and much more.Trends in biochemical sciences · 2024
    Review
  9. Review
  10. Review
  11. Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Exploring links between 2-oxoglutarate-dependent oxygenases and Alzheimer's disease.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2022
    Review
  18. JMJD family proteins in cancer and inflammation.Signal transduction and targeted therapy · 2022
    Review
  19. Article
  20. Article

14 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Tianshu FengCentre for Cellular and Molecular Physiology, Oxford University, Roosevelt Drive, Oxford OX3 7BN, UK.
Atsushi YamamotoCentre for Cellular and Molecular Physiology, Oxford University, Roosevelt Drive, Oxford OX3 7BN, UK.
Sarah E WilkinsChemistry Research Laboratory, Oxford University, 12 Mansfield Road, Oxford OX1 3TA, UK.
Elizaveta SokolovaEngelhardt Institute of Molecular Biology, the Russian Academy of Sciences, 119991 Moscow, Russia.
Luke A YatesDivision of Structural Biology, Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford OX3 7BN, UK.
Martin MünzelChemistry Research Laboratory, Oxford University, 12 Mansfield Road, Oxford OX1 3TA, UK.
Pooja SinghCentre for Cellular and Molecular Physiology, Oxford University, Roosevelt Drive, Oxford OX3 7BN, UK.
Richard J HopkinsonChemistry Research Laboratory, Oxford University, 12 Mansfield Road, Oxford OX1 3TA, UK.
Roman FischerTarget Discovery Institute, Nuffield Department of Medicine, Oxford University, Roosevelt Drive, Oxford OX3 7FZ, UK.
Matthew E CockmanCentre for Cellular and Molecular Physiology, Oxford University, Roosevelt Drive, Oxford OX3 7BN, UK.
Jake ShelleyCentre for Cellular and Molecular Physiology, Oxford University, Roosevelt Drive, Oxford OX3 7BN, UK.
David C TrudgianBiochemistry Department and Proteomics Core, University of Texas Southwestern Medical Center, Dallas, TX 75390-9038, USA.
Johannes SchödelDepartment of Nephrology and Hypertension, Friedrich-Alexander-University Erlangen-Nuremberg, Erlangen 91054, Germany.
James S O McCullaghChemistry Research Laboratory, Oxford University, 12 Mansfield Road, Oxford OX1 3TA, UK.
Wei GeChemistry Research Laboratory, Oxford University, 12 Mansfield Road, Oxford OX1 3TA, UK.
Benedikt M KesslerTarget Discovery Institute, Nuffield Department of Medicine, Oxford University, Roosevelt Drive, Oxford OX3 7FZ, UK.
Robert J GilbertDivision of Structural Biology, Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford OX3 7BN, UK.
Ludmila Y FrolovaEngelhardt Institute of Molecular Biology, the Russian Academy of Sciences, 119991 Moscow, Russia.
Elena AlkalaevaEngelhardt Institute of Molecular Biology, the Russian Academy of Sciences, 119991 Moscow, Russia.
Peter J RatcliffeCentre for Cellular and Molecular Physiology, Oxford University, Roosevelt Drive, Oxford OX3 7BN, UK.
Christopher J SchofieldChemistry Research Laboratory, Oxford University, 12 Mansfield Road, Oxford OX1 3TA, UK.
Mathew L ColemanCentre for Cellular and Molecular Physiology, Oxford University, Roosevelt Drive, Oxford OX3 7BN, UK. Electronic address: m.coleman@bham.ac.uk.

Funding

Biotechnology and Biological Sciences Research CouncilMedical Research Council MR/K010816/1Wellcome Trust 090532Wellcome Trust 090532/Z/09/Z
6 · The paper itself

Abstract

Efficient stop codon recognition and peptidyl-tRNA hydrolysis are essential in order to terminate translational elongation and maintain protein sequence fidelity. Eukaryotic translational termination is mediated by a release factor complex that includes eukaryotic release factor 1 (eRF1) and eRF3. The N terminus of eRF1 contains highly conserved sequence motifs that couple stop codon recognition at the ribosomal A site to peptidyl-tRNA hydrolysis. We reveal that Jumonji domain-containing 4 (Jmjd4), a 2-oxoglutarate- and Fe(II)-dependent oxygenase, catalyzes carbon 4 (C4) lysyl hydroxylation of eRF1. This posttranslational modification takes place at an invariant lysine within the eRF1 NIKS motif and is required for optimal translational termination efficiency. These findings further highlight the role of 2-oxoglutarate/Fe(II) oxygenases in fundamental cellular processes and provide additional evidence that ensuring fidelity of protein translation is a major role of hydroxylation.

Indexed as

Gene Expression RegulationProtein BiosynthesisAmino Acid SequenceAnimalsCatalysisCell Line, TumorCodon, TerminatorHeLa CellsHistone DemethylasesHumansHydrolysisHydroxylationJumonji Domain-Containing Histone DemethylasesMixed Function OxygenasesModels, MolecularMolecular Sequence DataCodon, TerminatorETF1 protein, humanHistone DemethylasesJMJD4 protein, humanJumonji Domain-Containing Histone DemethylasesMixed Function OxygenasesPeptide Termination Factors

Identifiers

PMID24486019
PMCPMC3991326

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.