Evidence map›Paper›PMID 24484633›Full record

ArticleBMC nephrology2014

Resolution of the three dimensional structure of components of the glomerular filtration barrier.

Kenton P Arkill, Klaus Qvortrup, Tobias Starborg, Judith M Mantell, Carlo Knupp, C Charles Michel, Steve J Harper, Andy H J Salmon, John M Squire, Dave O Bates and 1 more

Abstract read
In one paragraph

Article in BMC nephrology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. Article
  2. Hemodynamic simulation andPhysics of fluids (Woodbury, N.Y. : 1994) · 2025
    Article
  3. Article
  4. Article
  5. Review
  6. John squire and endothelial glycocalyx structure: an unfinished story.Journal of muscle research and cell motility · 2023
    Review
  7. Article
  8. Article
  9. Article
  10. AI applications in renal pathology.Kidney international · 2021
    Review
  11. A new view of macula densa cell microanatomy.American journal of physiology. Renal physiology · 2021
    Article
  12. Review
  13. Complexities of the glomerular basement membrane.Nature reviews. Nephrology · 2021
    Review
  14. Article
  15. Article
  16. Review
  17. Review
  18. Review
  19. Review
  20. Novel Microscopic Techniques for Podocyte Research.Frontiers in endocrinology · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Kenton P ArkillNanoscale Physics Research Laboratories, School of Physics and Astronomy, University of Birmingham, Birmingham, UK. kenton.arkill@bristol.ac.uk.
Klaus Qvortrup
Tobias Starborg
Judith M Mantell
Carlo Knupp
C Charles Michel
Steve J Harper
Andy H J Salmon
John M Squire
Dave O Bates
Chris R Neal

Funding

British Heart Foundation PG/08/059/25335Medical Research Council G0600920Medical Research Council G0802829Medical Research Council G10002073Medical Research Council G1002073
6 · The paper itself

Abstract

backgroundThe human glomerulus is the primary filtration unit of the kidney, and contains the Glomerular Filtration Barrier (GFB). The GFB had been thought to comprise 3 layers - the endothelium, the basement membrane and the podocyte foot processes. However, recent studies have suggested that at least two additional layers contribute to the function of the GFB, the endothelial glycocalyx on the vascular side, and the sub-podocyte space on the urinary side. To investigate the structure of these additional layers is difficult as it requires three-dimensional reconstruction of delicate sub-microscopic (<1 μm) cellular and extracellular elements.

methodsHere we have combined three different advanced electron microscopic techniques that cover multiple orders of magnitude of volume sampled, with a novel staining methodology (Lanthanum Dysprosium Glycosaminoglycan adhesion, or LaDy GAGa), to determine the structural basis of these two additional layers. Serial Block Face Scanning Electron Microscopy (SBF-SEM) was used to generate a 3-D image stack with a volume of a 5.3 x 105 μm3 volume of a whole kidney glomerulus (13% of glomerular volume). Secondly, Focused Ion Beam milling Scanning Electron Microscopy (FIB-SEM) was used to image a filtration region (48 μm3 volume). Lastly Transmission Electron Tomography (Tom-TEM) was performed on a 0.3 μm3 volume to identify the fine structure of the glycocalyx.

resultsTom-TEM clearly showed 20 nm fibre spacing in the glycocalyx, within a limited field of view. FIB-SEM demonstrated, in a far greater field of view, how the glycocalyx structure related to fenestrations and the filtration slits, though without the resolution of TomTEM. SBF-SEM was able to determine the extent of the sub-podocyte space and glycocalyx coverage, without additional heavy metal staining. Neither SBF- nor FIB-SEM suffered the anisotropic shrinkage under the electron beam that is seen with Tom-TEM.

conclusionsThese images demonstrate that the three dimensional structure of the GFB can be imaged, and investigated from the whole glomerulus to the fine structure of the glycocalyx using three dimensional electron microscopy techniques. This should allow the identification of structural features regulating physiology, and their disruption in pathological states, aiding the understanding of kidney disease.

Indexed as

AnimalsGlomerular Filtration BarrierGlycocalyxImaging, Three-DimensionalMaleMicroscopy, ElectronRatsRats, Sprague-DawleyReproducibility of ResultsSensitivity and Specificity

Identifiers

PMID24484633
PMCPMC3922634

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.