Evidence map›Paper›PMID 24483480›Full record

ArticlePhysical review. E, Statistical, nonlinear, and soft matter physics2013

Teardrop shapes minimize bending energy of fusion pores connecting planar bilayers.

Rolf J Ryham, Mark A Ward, Fredric S Cohen

Abstract read
In one paragraph

Article in Physical review. E, Statistical, nonlinear, and soft matter physics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Continuum Models of Membrane Fusion: Evolution of the Theory.International journal of molecular sciences · 2020
    Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. How Viruses Invade Cells.Biophysical journal · 2016
    Review
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Rolf J RyhamDepartment of Mathematics, Fordham University, 441 E. Fordham Road, Bronx, New York 10458, USA.
Mark A WardDepartment of Mathematics, Fordham University, 441 E. Fordham Road, Bronx, New York 10458, USA.
Fredric S CohenDepartment of Molecular Biophysics and Physiology, Rush University Medical Center, 1750 W. Harrison St., Chicago, Illinois 60612, USA.

Funding

Dynamics of Raft Formation and GrowthR01GM066837 · NIGMS · RUSH UNIVERSITY MEDICAL CENTER · PI COHEN, FREDRIC S · 2003 to 2012
$2.2M
Molecular Regulation of Fusion: Voltage Dependence and Local Physical InteractionR01GM101539 · NIGMS · RUSH UNIVERSITY MEDICAL CENTER · PI COHEN, FREDRIC S · 2013 to 2016
$1.4M
NIGMS NIH HHS GM101539NIGMS NIH HHS R01 GM066837NIGMS NIH HHS R01 GM101539
6 · The paper itself

Abstract

A numerical gradient flow procedure was devised to characterize minimal energy shapes of fusion pores connecting two parallel planar bilayer membranes. Pore energy, composed of splay, tilt, and stretching, was obtained by modeling each bilayer as two monolayers and treating each monolayer of a bilayer membrane as a freely deformable surface described with a mean lipid orientation field. Voids between the two monolayers were prevented by a steric penalty formulation. Pore shapes were assumed to possess both axial and reflectional symmetry. For fixed pore radius and bilayer separation, the gradient flow procedure was applied to initially toroidal pore shapes. Using initially elliptical pore shapes yielded the same final shape. The resulting minimal pore shapes and energies were analyzed as a function of pore dimension and lipid composition. Previous studies either assumed or confined pore shapes, thereby tacitly supplying an unspecified amount of energy to maintain shape. The shapes derived in the present study were outputs of calculations and an externally provided energy was not supplied. Our procedure therefore yielded energy minima significantly lower than those reported in prior studies. The membrane of minimal energy pores bowed outward near the pore lumen, yielding a pore length that exceeded the distance between the two fusing membranes.

Indexed as

Mechanical PhenomenaMembrane FusionModels, BiologicalBiomechanical PhenomenaCell MembraneLipid BilayersPorosityThermodynamicsLipid Bilayers

Identifiers

PMID24483480
PMCPMC4343043

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.