Evidence map›Paper›PMID 24482668›Full record

ArticleImmunome research2011

HLA mismatches and hematopoietic cell transplantation: structural simulations assess the impact of changes in peptide binding specificity on transplant outcome.

Chen Yanover, Effie W Petersdorf, Mari Malkki, Ted Gooley, Stephen Spellman, Andrea Velardi, Peter Bardy, Alejandro Madrigal, Jean-Denis Bignon, Philip Bradley

Abstract read
In one paragraph

Article in Immunome research, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. HLA Matching in Unrelated Stem Cell Transplantation up to Date.Transfusion medicine and hemotherapy : offizielles Organ der Deutschen Gesellschaft fur Transfusionsmedizin und Immunhamatologie · 2019
    Review
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Chen YanoverProgram in Computational Biology, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Effie W PetersdorfDivision of Clinical Research, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Mari MalkkiDivision of Clinical Research, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Ted GooleyDivision of Clinical Research, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Stephen SpellmanCenter for International Blood and Marrow Transplant Research, USA.
Andrea VelardiEuropean Group for Blood and Marrow Transplantation, Italy.
Peter BardyAustralian Bone Marrow Donor Registry, Australia.
Alejandro MadrigalAnthony Nolan, UK.
Jean-Denis BignonBlood Bank Nantes and SFGM, France.
Philip BradleyProgram in Computational Biology, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.

Funding

VIRUS-MEDIATED MYELOSUPPRESSIONP01CA018029 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Evan Newell · 1985 to 2026
$128.4M
Data Resource for Analyzing Blood &Marrow TransplantsU24CA076518 · NCI · MEDICAL COLLEGE OF WISCONSIN · PI Amy M Moskop, Bronwen Shaw · 1998 to 2026
$105.2M
PB vs. BMU01HL069294 · NHLBI · MEDICAL COLLEGE OF WISCONSIN · PI HOROWITZ, MARY MARESCA · 2001 to 2010
$63.3M
Hematopopietic Stem Cell TransplantationU01AI069197 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Effie W Petersdorf · 2005 to 2026
$18.9M
NCI NIH HHS P01 CA018029NCI NIH HHS U24 CA076518NHLBI NIH HHS U01 HL069294NIAID NIH HHS U01 AI069197
6 · The paper itself

Abstract

The success of hematopoietic cell transplantation from an unrelated donor depends in part on the degree of Human Histocompatibility Leukocyte Antigen (HLA) matching between donor and patient. We present a structure-based analysis of HLA mismatching, focusing on individual amino acid mismatches and their effect on peptide binding specificity. Using molecular modeling simulations of HLA-peptide interactions, we find evidence that amino acid mismatches predicted to perturb peptide binding specificity are associated with higher risk of mortality in a large and diverse dataset of patient-donor pairs assembled by the International Histocompatibility Working Group in Hematopoietic Cell Transplantation consortium. This analysis may represent a first step toward sequence-based prediction of relative risk for HLA allele mismatches.

Identifiers

PMID24482668
PMCPMC3904355

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.