Evidence map›Paper›PMID 24481273›Full record

ArticleNature protocols2014

One-step targeted gene deletion in Candida albicans haploids.

Guisheng Zeng, Yan-Ming Wang, Fong Yee Chan, Yue Wang

Abstract read
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In one paragraph

Article in Nature protocols, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
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  6. Orchestrated actin nucleation by theThe Journal of biological chemistry · 2020
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  7. Microorganisms · 2020
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  10. Maize Transposable ElementsG3 (Bethesda, Md.) · 2018
    Article
  11. Article
  12. Use of Haploid Model ofFrontiers in cellular and infection microbiology · 2018
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Guisheng ZengInstitute of Molecular and Cell Biology, Agency for Science, Technology and Research, Proteos, Singapore.
Yan-Ming WangInstitute of Molecular and Cell Biology, Agency for Science, Technology and Research, Proteos, Singapore.
Fong Yee ChanInstitute of Molecular and Cell Biology, Agency for Science, Technology and Research, Proteos, Singapore.
Yue Wang1] Institute of Molecular and Cell Biology, Agency for Science, Technology and Research, Proteos, Singapore. [2] Department of Biochemistry, Yong Loo Lin School of Medicine, National University of Singapore, Singapore.
Agency for Science, Technology and Research · SGInstitute of Molecular and Cell Biology · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The recent discovery of haploids in Candida albicans and the construction of tool strains carrying multiple auxotrophic markers have enabled, for the first time, performing one-step gene deletions in this fungal human pathogen. This breakthrough promises to greatly facilitate the molecular and genetic study of C. albicans biology and pathogenicity. However, the construction of gene-deletion mutants in C. albicans haploids involves many technical difficulties, particularly low transformation efficiency and autodiploidization. Here we describe a highly effective protocol for designing and performing one-step gene deletion in C. albicans haploids, which takes ∼11 d to complete (not including plasmid construction, which may take ∼2 weeks). A gene deletion cassette is constructed on a plasmid and subsequently released for transformation by lithium acetate incubation or electroporation. Desired gene-deletion mutants are identified and their ploidy is assessed simultaneously by colony PCR before final confirmation by flow cytometry.

Indexed as

Gene DeletionHaploidyAcetatesCandida albicansElectroporationFlow CytometryGenetic EngineeringPlasmidsPolymerase Chain ReactionAcetateslithium acetate

Identifiers

PMID24481273
OpenAlexW1977180455

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.