ReviewThe Plant cell2014
Mathematical models light up plant signaling.
Review in The Plant cell, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
16 citing papers in PubMed.
- Quantifying Plant Signaling Pathways by Integrating Luminescence-Based Biosensors and Mathematical Modeling.Biosensors · 2024Article
- Mathematical Modeling Reveals That Sucrose Regulates Leaf Senescence via Dynamic Sugar Signaling Pathways.International journal of molecular sciences · 2022Article
- Fifteen compelling open questions in plant cell biology.The Plant cell · 2022Review
- Universality in kinetic models of circadian rhythms inJournal of mathematical biology · 2021Article
- Isolation and Functional Characterization of TwoInternational journal of molecular sciences · 2021Article
- Proteomic analysis of a clavata-like phenotype mutant in Brassica napus.Genetics and molecular biology · 2020Article
- A multi-model framework for the Arabidopsis life cycle.Journal of experimental botany · 2019Article
- A quantitative model of the phytochrome-PIF light signalling initiating chloroplast development.Scientific reports · 2017Article
- Plant Science View on Biohybrid Development.Frontiers in bioengineering and biotechnology · 2017Review
- Reshaping Plant Biology: Qualitative and Quantitative Descriptors for Plant Morphology.Frontiers in plant science · 2017Review
- SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.Plant physiology · 2015Article
- Quantitative analysis of receptor tyrosine kinase-effector coupling at functionally relevant stimulus levels.The Journal of biological chemistry · 2015Article
- A quantitative and dynamic model of the Arabidopsis flowering time gene regulatory network.PloS one · 2015Article
- The plant cell reviews aspects of photobiology: it's a matter of stop 'n go.The Plant cell · 2014Article
- Multiple pathways regulate shoot branching.Frontiers in plant science · 2014Article
- Unique and contrasting effects of light and temperature cues on plant transcriptional programs.TranscriptionReview
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Authors and funding
6 authors.
Funding
Abstract
Plants respond to changes in the environment by triggering a suite of regulatory networks that control and synchronize molecular signaling in different tissues, organs, and the whole plant. Molecular studies through genetic and environmental perturbations, particularly in the model plant Arabidopsis thaliana, have revealed many of the mechanisms by which these responses are actuated. In recent years, mathematical modeling has become a complementary tool to the experimental approach that has furthered our understanding of biological mechanisms. In this review, we present modeling examples encompassing a range of different biological processes, in particular those regulated by light. Current issues and future directions in the modeling of plant systems are discussed.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.