Evidence map›Paper›PMID 24480644›Full record

ArticleDevelopmental cell2014

TALE factors poise promoters for activation by Hox proteins.

Seong-Kyu Choe, Franck Ladam, Charles G Sagerström

Abstract read
In one paragraph

Article in Developmental cell, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed.

  1. Review
  2. Article
  3. HOXA9 Regulome and Pharmacological Interventions in Leukemia.Advances in experimental medicine and biology · 2024
    Review
  4. Article
  5. Meis homeobox genes control progenitor competence in the retina.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  6. Frontiers in plant science · 2021
    Article
  7. Review
  8. Mechanisms Underlying Hox-Mediated Transcriptional Outcomes.Frontiers in cell and developmental biology · 2021
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Hindbrain induction and patterning during early vertebrate development.Cellular and molecular life sciences : CMLS · 2019
    Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Journal of immunology (Baltimore, Md. : 1950) · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Seong-Kyu ChoeDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605, USA.
Franck LadamDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605, USA.
Charles G SagerströmDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605, USA. Electronic address: charles.sagerstrom@umassmed.edu.

Funding

MOLECULAR ANALYSIS OF HINDBRAIN FORMATIONR01NS038183 · NINDS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI Charles G Sagerstrom · 1999 to 2026
$8.3M
Molecular Analysis of Hindbrain FormationR56NS038183 · NINDS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI SAGERSTROM, CHARLES G · 2007 to 2007
$400k
NINDS NIH HHS NS038183NINDS NIH HHS R01 NS038183NINDS NIH HHS R56 NS038183
6 · The paper itself

Abstract

Hox proteins form complexes with TALE cofactors from the Pbx and Prep/Meis families to control transcription, but it remains unclear how Hox:TALE complexes function. Examining a Hoxb1b:TALE complex that regulates zebrafish hoxb1a transcription, we find maternally deposited TALE proteins at the hoxb1a promoter already during blastula stages. These TALE factors recruit histone-modifying enzymes to promote an active chromatin profile at the hoxb1a promoter and also recruit RNA polymerase II (RNAPII) and P-TEFb. However, in the presence of TALE factors, RNAPII remains phosphorylated on serine 5 and hoxb1a transcription is inefficient. By gastrula stages, Hoxb1b binds together with TALE factors to the hoxb1a promoter. This triggers P-TEFb-mediated transitioning of RNAPII to the serine 2-phosphorylated form and efficient hoxb1a transcription. We conclude that TALE factors access promoters during early embryogenesis to poise them for activation but that Hox proteins are required to trigger efficient transcription.

Indexed as

Promoter Regions, GeneticTranscriptional ActivationAnimalsBlastulaGastrulaGene Expression Regulation, DevelopmentalHomeodomain ProteinsPhosphorylationPositive Transcriptional Elongation Factor BRNA Polymerase IIZebrafishZebrafish ProteinsHomeodomain ProteinsPositive Transcriptional Elongation Factor BRNA Polymerase IIZebrafish Proteins

Identifiers

PMID24480644
PMCPMC3930922

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.