Evidence map›Paper›PMID 24478989›Full record

ArticleFrontiers in cellular and infection microbiology2014

Transcriptome analysis of Vibrio parahaemolyticus in type III secretion system 1 inducing conditions.

Seth D Nydam, Devendra H Shah, Douglas R Call

Open access · goldAbstract readComparative Study
In one paragraph

Article in Frontiers in cellular and infection microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
26.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 284 citations in OpenAlex.

  1. Pathogen hijacks focal adhesion signaling by a T3SS effector CteX.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. T3SS protein EsrC binds to theApplied and environmental microbiology · 2024
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Conservation of Small Regulatory RNAs inInternational journal of molecular sciences · 2019
    Article
  8. Article
  9. Exploring the Genomic Traits of Non-toxigenicFrontiers in microbiology · 2018
    Article
  10. Article
  11. Article
  12. ExsE Is a Negative Regulator for T3SS Gene Expression inFrontiers in cellular and infection microbiology · 2016
    Article
  13. Article
  14. Article
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Seth D NydamDepartment of Veterinary Microbiology and Pathology, Washington State University Pullman, WA, USA ; Paul G. Allen School for Global Animal Health, Washington State University Pullman, WA, USA.
Devendra H ShahDepartment of Veterinary Microbiology and Pathology, Washington State University Pullman, WA, USA ; Paul G. Allen School for Global Animal Health, Washington State University Pullman, WA, USA.
Douglas R CallDepartment of Veterinary Microbiology and Pathology, Washington State University Pullman, WA, USA ; Paul G. Allen School for Global Animal Health, Washington State University Pullman, WA, USA.
Washington State University · US

Funding

TRAINING IN BIOTECHNOLOGY: EMPHASIS ON PROTEIN CHEMISTRYT32GM008336 · NIGMS · WASHINGTON STATE UNIVERSITY · PI CALL, DOUGLAS R. · 1989 to 2023
$8.9M
Infectious Diseases and Microbial Immunology Training ProgramT32AI007025 · NIAID · WASHINGTON STATE UNIVERSITY · PI Thomas H KAWULA, M KARIUKI NJENGA · 1985 to 2026
$7.4M
FOOD &WATERBORNE DISEASES INTEGRATED RESEARCH NETWORK, ZOONOES RESEAR-N01AI030055 · NIAID · WASHINGTON STATE UNIVERSITY · 2003 to 2003
–
NIAID NIH HHS N01 AI030055NIAID NIH HHS T32 AI007025NIAID NIH HHS T32-AI07025NIGMS NIH HHS T32 GM008336NIGMS NIH HHS T32-GM008336
6 · The paper itself

Abstract

Vibrio parahaemolyticus is an emerging bacterial pathogen capable of causing inflammatory gastroenteritis, wound infections, and septicemia. As a food-borne illness, infection is most frequently associated with the consumption of raw or undercooked seafood, particularly shellfish. It is the primary cause of Vibrio-associated food-borne illness in the United States and the leading cause of food-borne illness in Japan. The larger of its two chromosomes harbors a set of genes encoding type III section system 1 (T3SS1), a virulence factor present in all V. parahaemolyticus strains that is similar to the Yersinia ysc T3SS. T3SS1 translocates effector proteins into eukaryotic cells where they induce changes to cellular physiology and modulate host-pathogen interactions. T3SS1 is also responsible for cytotoxicity toward several different cultured cell lines as well as mortality in a mouse model. Herein we used RNA-seq to obtain global transcriptome patterns of V. parahaemolyticus under conditions that either induce [growth in Dulbecco's Modified Eagle Medium (DMEM) media, in trans expression of transcriptional regulator exsA] or repress T3SS1 expression (growth in LB-S media, in trans exsD expression) and during infection of HeLa cells over time. Comparative transcriptomic analysis demonstrated notable differences in the expression patterns under inducing conditions and was also used to generate an expression profile of V. parahaemolyticus during infection of HeLa cells. In addition, we identified several new genes that are associated with T3SS1 expression and may warrant further study.

Indexed as

Bacterial Secretion SystemsGene Expression ProfilingCulture MediaHeLa CellsHigh-Throughput Nucleotide SequencingHumansVibrio parahaemolyticusBacterial Secretion SystemsCulture MediaRNA-seqT3SStype III secretion systemVibrio parahaemolyticus

Identifiers

PMID24478989
PMCPMC3895804
OpenAlexW2088079712

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.