Evidence map›Paper›PMID 24478314›Full record

ArticleThe Journal of biological chemistry2014

A remodeled protein arginine methyltransferase 1 (PRMT1) generates symmetric dimethylarginine.

Shanying Gui, Symon Gathiaka, Jun Li, Jun Qu, Orlando Acevedo, Joan M Hevel

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 29 citations in OpenAlex.

  1. Review
  2. Promiscuous Enzymes for Residue-Specific Peptide and Protein Late-Stage Functionalization.Chembiochem : a European journal of chemical biology · 2023
    Review
  3. Review
  4. Protein arginine methylation in viral infection and antiviral immunity.International journal of biological sciences · 2023
    Review
  5. Article
  6. Structure, Activity, and Function of PRMT1.Life (Basel, Switzerland) · 2021
    Review
  7. Review
  8. Review
  9. Review
  10. Review
  11. Article
  12. Article
  13. Review
  14. Review
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Shanying GuiFrom the Department of Chemistry and Biochemistry, Utah State University, Logan, Utah 84322.
Symon Gathiaka
Jun Li
Jun Qu
Orlando Acevedo
Joan M Hevel
Auburn University · USUniversity at Buffalo, State University of New York · USUtah State University · US

Funding

Systems Biology of GlycosylationR01HL103411 · NHLBI · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI NEELAMEGHAM, SRIRAM · 2011 to 2025
$7.1M
Synergistic Pharmacologicjntervention for Prevention of ROP (SPIPROP STUDY)U54HD071594 · NICHD · SUNY DOWNSTATE MEDICAL CENTER · PI ARANDA, JACOB V · 2011 to 2015
$3.6M
Protein Arginine Methylation in TrypanosomesR01AI060260 · NIAID · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI READ, LAURIE K. · 2003 to 2014
$3.3M
Peripheral biomarkers of cocaine dependence and relapseR21DA027528 · NIDA · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI QU, JUN, STRAUBINGER, ROBERT M · 2009 to 2010
$631k
SUBCELLULAR DOMAINS OF MYELINATING-GLIA: CAPTURING AXONAL CONTACT.R21HD075363 · NICHD · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI FELTRI, M. LAURA · 2012 to 2013
$424k
Protein Arginine Methylation in TrypanosomesR56AI060260 · NIAID · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI READ, LAURIE K. · 2009 to 2009
$381k
NHLBI NIH HHS HL103411NHLBI NIH HHS R01 HL103411NIAID NIH HHS AI060260NIAID NIH HHS R01 AI060260NIAID NIH HHS R56 AI060260NICHD NIH HHS HD075363NICHD NIH HHS R21 HD075363NICHD NIH HHS U54 HD071594NICHD NIH HHS U54HD071594NIDA NIH HHS DA027528NIDA NIH HHS R21 DA027528
6 · The paper itself

Abstract

Protein arginine methylation is emerging as a significant post-translational modification involved in various cell processes and human diseases. As the major arginine methylation enzyme, protein arginine methyltransferase 1 (PRMT1) strictly generates monomethylarginine and asymmetric dimethylarginine (ADMA), but not symmetric dimethylarginine (SDMA). The two types of dimethylarginines can lead to distinct biological outputs, as highlighted in the PRMT-dependent epigenetic control of transcription. However, it remains unclear how PRMT1 product specificity is regulated. We discovered that a single amino acid mutation (Met-48 to Phe) in the PRMT1 active site enables PRMT1 to generate both ADMA and SDMA. Due to the limited amount of SDMA formed, we carried out quantum mechanical calculations to determine the free energies of activation of ADMA and SDMA synthesis. Our results indicate that the higher energy barrier of SDMA formation (ΔΔG(‡) = 3.2 kcal/mol as compared with ADMA) may explain the small amount of SDMA generated by M48F-PRMT1. Our study reveals unique energetic challenges for SDMA-forming methyltransferases and highlights the exquisite control of product formation by active site residues in the PRMTs.

Indexed as

AnimalsArginineCatalytic DomainHumansMolecular Dynamics SimulationMutationProtein-Arginine N-MethyltransferasesRatsSubstrate SpecificityThermodynamicsArgininedimethylargininePRMT1 protein, ratProtein-Arginine N-MethyltransferasesComputer ModelingDimethylarginineEnzyme MechanismsHistone MethylationProduct SpecificityProtein Arginine MethyltransferaseProtein MethylationS-adenosylmethionine (SAM)Site-directed Mutagenesis

Identifiers

PMID24478314
PMCPMC3979365
OpenAlexW2002952111

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.