Evidence map›Paper›PMID 24478124›Full record

ReviewPathogens and disease2014

Minimum information about a biofilm experiment (MIABiE): standards for reporting experiments and data on sessile microbial communities living at interfaces.

Anália Lourenço, Tom Coenye, Darla M Goeres, Gianfranco Donelli, Andreia S Azevedo, Howard Ceri, Filipa L Coelho, Hans-Curt Flemming, Talis Juhna, Susana P Lopes and 7 more

Abstract readReview
In one paragraph

Review in Pathogens and disease, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Measuring Antimicrobial Efficacy against Biofilms: a Meta-analysis.Antimicrobial agents and chemotherapy · 2019
    Pooled it
  2. Review
  3. Review
  4. Review
  5. Article
  6. Review
  7. Drug delivery strategies for antibiofilm therapy.Nature reviews. Microbiology · 2023
    Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Review
  17. Testing Anti-Biofilm Polymeric Surfaces: Where to Start?International journal of molecular sciences · 2019
    Review
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Anália LourençoDepartamento de Informática, Universidade de Vigo, ESEI - Escuela Superior de Ingeniería Informática, Ourense, Spain; IBB - Institute for Biotechnology and Bioengineering, Centre of Biological Engineering, University of Minho, Braga, Portugal.
Tom Coenye
Darla M Goeres
Gianfranco Donelli
Andreia S Azevedo
Howard Ceri
Filipa L Coelho
Hans-Curt Flemming
Talis Juhna
Susana P Lopes
Rosário Oliveira
Antonio Oliver
Mark E Shirtliff
Ana M Sousa
Paul Stoodley
Maria Olivia Pereira
Nuno F Azevedo

Funding

Staphylococcus aureus biofilms: in vitro and in vivo studiesR01AI069568 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI SHIRTLIFF, MARK E · 2007 to 2011
$2.1M
NIAID NIH HHS R01 AI069568
6 · The paper itself

Abstract

The minimum information about a biofilm experiment (MIABiE) initiative has arisen from the need to find an adequate and scientifically sound way to control the quality of the documentation accompanying the public deposition of biofilm-related data, particularly those obtained using high-throughput devices and techniques. Thereby, the MIABiE consortium has initiated the identification and organization of a set of modules containing the minimum information that needs to be reported to guarantee the interpretability and independent verification of experimental results and their integration with knowledge coming from other fields. MIABiE does not intend to propose specific standards on how biofilms experiments should be performed, because it is acknowledged that specific research questions require specific conditions which may deviate from any standardization. Instead, MIABiE presents guidelines about the data to be recorded and published in order for the procedure and results to be easily and unequivocally interpreted and reproduced. Overall, MIABiE opens up the discussion about a number of particular areas of interest and attempts to achieve a broad consensus about which biofilm data and metadata should be reported in scientific journals in a systematic, rigorous and understandable manner.

Indexed as

BiofilmsSoftwareComputational BiologyDatabases, FactualDocumentationGuidelines as TopicHumansResearchResearch DesignTerminology as TopicVocabulary, Controlledbiofilmdata interchangedata standardizationmachine-readable formatsmicrobial communities

Identifiers

PMID24478124
PMCPMC4406403

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.